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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2anb 5GP Guanylate kinase 2.7.4.8

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2anb 5GPGuanylate kinase 2.7.4.8 1.095
1lvg 5GPGuanylate kinase 2.7.4.8 0.864
2j41 5GPGuanylate kinase / 0.839
1ex7 5GPGuanylate kinase 2.7.4.8 0.812
1gky 5GPGuanylate kinase 2.7.4.8 0.796
3tr0 5GPGuanylate kinase / 0.784
2an9 GDPGuanylate kinase 2.7.4.8 0.729
3lnc 5GPGuanylate kinase / 0.726
2f3r G5PGuanylate kinase 2.7.4.8 0.683
1odn APVIsopenicillin N synthase 1.21.3.1 0.678
3akd CDPCytidylate kinase / 0.666
1xmm M7Gm7GpppX diphosphatase 3.6.1.59 0.664
3uwq U5POrotidine 5'-phosphate decarboxylase / 0.662
3zid GDPTubulin-like protein CetZ / 0.655