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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2am9 TES Androgen receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2am9 TESAndrogen receptor / 1.062
1t7f DHTAndrogen receptor / 1.022
1t7t DHTAndrogen receptor / 1.021
1t7m DHTAndrogen receptor / 1.012
2q7i TESAndrogen receptor / 1.000
2pit DHTAndrogen receptor / 0.995
1t76 DHTAndrogen receptor / 0.994
2q7l TESAndrogen receptor / 0.993
2ylo TESAndrogen receptor / 0.988
2q7j TESAndrogen receptor / 0.987
2ylq TESAndrogen receptor / 0.959
4hlw TESAndrogen receptor / 0.955
4ofu DHTAndrogen receptor / 0.953
1t63 DHTAndrogen receptor / 0.925
4oed DHTAndrogen receptor / 0.924
2yhd TESAndrogen receptor / 0.919
2pix DHTAndrogen receptor / 0.880
2qpy DHTAndrogen receptor / 0.878
2piv DHTAndrogen receptor / 0.840
2amb 17HAndrogen receptor / 0.837
4k7a DHTAndrogen receptor / 0.837
2pip DHTAndrogen receptor / 0.821
4oez DHTAndrogen receptor / 0.818
2z4j DHTAndrogen receptor / 0.806
1t7r DHTAndrogen receptor / 0.800
1gs4 ZK5Androgen receptor / 0.797
1xq3 R18Androgen receptor / 0.796
2pkl DHTAndrogen receptor / 0.785
2ama DHTAndrogen receptor / 0.782
2ao6 R18Androgen receptor / 0.780
1t65 DHTAndrogen receptor / 0.779
1xow R18Androgen receptor / 0.778
4oea DHTAndrogen receptor / 0.777
2q7k TESAndrogen receptor / 0.775
2ylp TESAndrogen receptor / 0.772
1t79 DHTAndrogen receptor / 0.767
4e5l DBHPolymerase acidic protein / 0.763
2pio DHTAndrogen receptor / 0.756
2piw DHTAndrogen receptor / 0.755
1t74 DHTAndrogen receptor / 0.754
4oey DHTAndrogen receptor / 0.754
4e5i 0N9Polymerase acidic protein / 0.744
1t73 DHTAndrogen receptor / 0.743
2pnu ENMAndrogen receptor / 0.706
1t5z DHTAndrogen receptor / 0.698
1e3k R18Progesterone receptor / 0.688
3zqt TESAndrogen receptor / 0.685
2d09 FLVBiflaviolin synthase CYP158A2 / 0.681
2piq DHTAndrogen receptor / 0.680
3g1r FIT3-oxo-5-beta-steroid 4-dehydrogenase / 0.671
2pir DHTAndrogen receptor / 0.661
4e5f 0N7Polymerase acidic protein / 0.660
1yb1 AOIEstradiol 17-beta-dehydrogenase 11 1.1.1.62 0.656
3w5t LHPVitamin D3 receptor / 0.654
1xj7 DHTAndrogen receptor / 0.652
4at2 ASDPossible succinate dehydrogenase / 0.650