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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2aj4 ANP Galactokinase 2.7.1.6

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2aj4 ANPGalactokinase 2.7.1.6 1.101
3oii SAHRibosomal RNA small subunit methyltransferase NEP1 / 0.677
4pzk SAHPutative tRNA (cytidine(34)-2'-O)-methyltransferase / 0.671
4fak SAMRibosomal RNA large subunit methyltransferase H / 0.657
1amw ADPATP-dependent molecular chaperone HSP82 / 0.656
3hyo ADPPyridoxal kinase / 0.656
2a2c ADPN-acetylgalactosamine kinase 2.7.1.157 0.655
2egv SAMRibosomal RNA small subunit methyltransferase E 2.1.1.193 0.653
3bbd SAHRibosomal RNA small subunit methyltransferase Nep1 2.1.1 0.653
4c5b ADPD-alanine--D-alanine ligase B 6.3.2.4 0.653
2egw SAHRibosomal RNA small subunit methyltransferase E 2.1.1.193 0.652
2ha8 SAHProbable methyltransferase TARBP1 / 0.652
3o7b SAHRibosomal RNA small subunit methyltransferase Nep1 / 0.652
4cnf MTASpoU rRNA methylase / 0.651
1wc1 TATAdenylate cyclase / 0.650