Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ab8 MTP Adenosine kinase 2.7.1.20

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ab8 MTPAdenosine kinase 2.7.1.20 1.029
2a9y 26AAdenosine kinase 2.7.1.20 0.921
2a9z 26AAdenosine kinase 2.7.1.20 0.919
3uq9 TBNPutative adenosine kinase / 0.764
3vas ADNPutative adenosine kinase / 0.748
3vaq ADNPutative adenosine kinase / 0.743
3uq6 ADNPutative adenosine kinase / 0.742
4dc3 2FAPutative adenosine kinase / 0.734
3otx AP5Adenosine kinase, putative / 0.711
2pkm ADNAdenosine kinase 2.7.1.20 0.669