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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2a9z 26A Adenosine kinase 2.7.1.20

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2a9z 26AAdenosine kinase 2.7.1.20 1.039
2a9y 26AAdenosine kinase 2.7.1.20 1.031
2ab8 MTPAdenosine kinase 2.7.1.20 0.919
3uq9 TBNPutative adenosine kinase / 0.788
3uq6 ADNPutative adenosine kinase / 0.783
3vas ADNPutative adenosine kinase / 0.766
4dc3 2FAPutative adenosine kinase / 0.726
3vaq ADNPutative adenosine kinase / 0.725
3b1p NOSPfkB carbohydrate kinase family protein / 0.713
5ccb SAHtRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A 2.1.1.220 0.653