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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2a8y MTA S-methyl-5'-thioadenosine phosphorylase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2a8y MTAS-methyl-5'-thioadenosine phosphorylase / 0.937
3t94 MTAS-methyl-5'-thioadenosine phosphorylase / 0.917
1sd2 MTHS-methyl-5'-thioadenosine phosphorylase / 0.719
3ozc 4CTS-methyl-5'-thioadenosine phosphorylase / 0.710
1cg6 MTAS-methyl-5'-thioadenosine phosphorylase / 0.689
1k27 MTMS-methyl-5'-thioadenosine phosphorylase / 0.688