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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2a58 RBF 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2a58 RBF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.972
1kyv RBF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.868
1nqx RLP6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.772
2a59 LMZ6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.747
1nqu RDL6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.745
2c92 TP66,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.733
2vi5 Y196,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.731
1w19 T2P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.722
1kyy INI6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.720
1kyx CRM6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.715
1w19 T1P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.711
2o6h INI6,7-dimethyl-8-ribityllumazine synthase 1 2.5.1.78 0.680
1t13 INI6,7-dimethyl-8-ribityllumazine synthase 2 / 0.679
4kq6 DLZ6,7-dimethyl-8-ribityllumazine synthase / 0.678
1nqv LMZ6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.671
1x31 FMNSubunit alpha of sarocosine oxidase / 0.671
1x31 FMNSubunit beta of sarcosine oxidase / 0.671
2nli FMNLactate oxidase / 0.671
2zfa FMNLactate oxidase / 0.669
1w29 TS16,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.666
1w29 TS06,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.658
1rvv INI6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.657
4tmc FMNOld yellow enzyme / 0.657
4gap FADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial 1.6.5.9 0.656
4a3u FMNNADH:flavin oxidoreductase/NADH oxidase / 0.655
2a57 CRM6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.654
4b5n FMNNAD(P)H:flavin oxidoreductase Sye4 / 0.653
1vrq FMNSubunit alpha of sarocosine oxidase / 0.652
1vrq FMNSubunit beta of sarcosine oxidase / 0.652
4rje FNRLactate oxidase / 0.651