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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1zrq FAD 5,10-methylenetetrahydrofolate reductase 1.5.1.20

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1zrq FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.449
1zp4 FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.144
1zp3 FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.137
3fsu FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.086
2fmo FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.078
1zpt FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.077
3fst FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.066
1b5t FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.050
1v93 FADMethylenetetrahydrofolate reductase / 0.998
3apy FADMethylenetetrahydrofolate reductase / 0.917
3aty FMNProstaglandin F2a synthase / 0.667
1x0p FADTll0078 protein / 0.661
1kyv RBF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.656
2byc FMNBlue-light receptor of the BLUF-family / 0.654
3gfz FMNUncharacterized protein / 0.653
3p67 FMNPentaerythritol tetranitrate reductase / 0.650