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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1zq5 E04 Aldo-keto reductase family 1 member C3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1zq5 E04Aldo-keto reductase family 1 member C3 / 1.297
2oax SNLMineralocorticoid receptor / 0.702
5hyr ESTEstrogen receptor / 0.675
3nbr ASDSteroid Delta-isomerase 5.3.3.1 0.663
4f9w LM4Mitogen-activated protein kinase 14 / 0.655
1y9r 1CAMineralocorticoid receptor / 0.654
4ruj VDXVitamin D3 receptor A / 0.652