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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1znq NAD Glyceraldehyde-3-phosphate dehydrogenase 1.2.1.12

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1znq NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.930
1vsv NADGlyceraldehyde-3-phosphate dehydrogenase / 0.862
1dc6 NADGlyceraldehyde-3-phosphate dehydrogenase A / 0.848
4o59 NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.845
4k9d NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.842
1u8f NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.839
1ywg NADGlyceraldehyde-3-phosphate dehydrogenase / 0.837
4o63 NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.832
3pym NADGlyceraldehyde-3-phosphate dehydrogenase 3 1.2.1.12 0.829
4z0h NADGlyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic 1.2.1.12 0.823
3cif NADGlyceraldehyde-3-phosphate dehydrogenase / 0.812
3v1y NADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic 1.2.1.12 0.811
5c7o NADGlyceraldehyde-3-phosphate dehydrogenase, testis-specific 1.2.1.12 0.808
3cps NADGlyceraldehyde-3-phosphate dehydrogenase / 0.807
1szj NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.801
3ids NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.781
4p8r NADGlyceraldehyde-3-phosphate dehydrogenase / 0.775
2vyv NADGlyceraldehyde-3-phosphate dehydrogenase A / 0.764
4boy NADGlyceraldehyde-3-phosphate dehydrogenase / 0.763
4lsm NADGlyceraldehyde-3-phosphate dehydrogenase / 0.762
1hdg NADGlyceraldehyde-3-phosphate dehydrogenase / 0.761
3hja NADGlyceraldehyde-3-phosphate dehydrogenase / 0.760
3zcx NADGlyceraldehyde-3-phosphate dehydrogenase / 0.759
1j0x NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.752
2b4r NADGlyceraldehyde-3-phosphate dehydrogenase / 0.752
1gd1 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.751
1nq5 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.747
2g82 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.745
3e5r NADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic 1.2.1.12 0.744
1cer NADGlyceraldehyde-3-phosphate dehydrogenase / 0.743
3cmc NADGlyceraldehyde-3-phosphate dehydrogenase / 0.743
1gad NADGlyceraldehyde-3-phosphate dehydrogenase A / 0.742
1nqo NADGlyceraldehyde-3-phosphate dehydrogenase / 0.742
1dss NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.738
4dbv NDPGlyceraldehyde-3-phosphate dehydrogenase / 0.738
2vyn NADGlyceraldehyde-3-phosphate dehydrogenase A / 0.737
1a7k NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.736
1nbo NADGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 1.2.1.13 0.733
1nqa NADGlyceraldehyde-3-phosphate dehydrogenase / 0.733
2d2i NAPGlyceraldehyde-3-phosphate dehydrogenase / 0.725
3doc NADGlyceraldehyde-3-phosphate dehydrogenase / 0.725
3k2b NADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic 1.2.1.13 0.724
3zdf NADGlyceraldehyde-3-phosphate dehydrogenase / 0.720
1gyp NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.717
3dmt NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.712
3l4s NADGlyceraldehyde-3-phosphate dehydrogenase 1 / 0.711
1qxs NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.710
1rm3 NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 1.2.1.13 0.704
2dbv NDPGlyceraldehyde-3-phosphate dehydrogenase / 0.700
3ksd NADGlyceraldehyde-3-phosphate dehydrogenase 1 / 0.700
3b20 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.698
1gae NADGlyceraldehyde-3-phosphate dehydrogenase A / 0.696
1rm4 NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 1.2.1.13 0.696
2i9p NAD3-hydroxyisobutyrate dehydrogenase, mitochondrial 1.1.1.31 0.696
1npt NADGlyceraldehyde-3-phosphate dehydrogenase / 0.693
1lso NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.691
1vc2 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.691
3f3s NADLambda-crystallin homolog / 0.689
2ep7 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.688
3qv1 NADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic 1.2.1.13 0.688
3dbv NADGlyceraldehyde-3-phosphate dehydrogenase / 0.687
3lvf NADGlyceraldehyde-3-phosphate dehydrogenase 1 / 0.686
1jn0 NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 1.2.1.13 0.682
1ihx SNDGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.677
3keq NADRedox-sensing transcriptional repressor Rex / 0.675
2g5c NADPrephenate dehydrogenase / 0.674
3l0d NADGlyceraldehyde-3-phosphate dehydrogenase / 0.667
3ggp NADPrephenate dehydrogenase / 0.663
3oet NADErythronate-4-phosphate dehydrogenase / 0.660
1m75 NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.659
3gvi ADPMalate dehydrogenase / 0.659
2pkr NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 1.2.1.13 0.657
4kug NAD3-hydroxybutyryl-CoA dehydrogenase / 0.656
3ojl NADCap5O / 0.655
1ur5 NADMalate dehydrogenase / 0.654
2o4c NADErythronate-4-phosphate dehydrogenase / 0.652
3keo NADRedox-sensing transcriptional repressor Rex / 0.652
1hku NADC-terminal-binding protein 1 1.1.1 0.651
1lsj NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.651
1sc6 NADD-3-phosphoglycerate dehydrogenase 1.1.1.95 0.651
3had NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.650