Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1zdf UPG Glycogenin-1 2.4.1.186

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1zdf UPGGlycogenin-1 2.4.1.186 1.273
1zdg UPGGlycogenin-1 2.4.1.186 1.101
3rmw UPGGlycogenin-1 2.4.1.186 0.923
3v0m 5GWHisto-blood group ABO system transferase / 0.889
3t7o UPGGlycogenin-1 2.4.1.186 0.868
5c3b URMHisto-blood group ABO system transferase / 0.829
3zgf IUGHisto-blood group ABO system transferase / 0.806
2vs5 GDUN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.797
5c4f UPGHisto-blood group ABO system transferase / 0.791
5c1l GDUHisto-blood group ABO system transferase / 0.781
5c4c UPGHisto-blood group ABO system transferase / 0.776
5c1h GDUHisto-blood group ABO system transferase / 0.774
5c3a URMHisto-blood group ABO system transferase / 0.772
5c48 URMHisto-blood group ABO system transferase / 0.767
5c47 URMHisto-blood group ABO system transferase / 0.762
4kc4 WS3Histo-blood group ABO system transferase / 0.751
3v0p 4GWHisto-blood group ABO system transferase / 0.746
3v0o 4GWHisto-blood group ABO system transferase / 0.745
4kc1 WS1Histo-blood group ABO system transferase / 0.741
5c4b UPGHisto-blood group ABO system transferase / 0.740
2vfz UPFN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.736
1ss9 UPFLgtC / 0.735
3v0n 4GWHisto-blood group ABO system transferase / 0.735
5c8r UPGHisto-blood group ABO system transferase / 0.728
5c1g GDUHisto-blood group ABO system transferase / 0.726
4kc2 WS2Histo-blood group ABO system transferase / 0.716
1ga8 UPFLgtC / 0.709
1g8o U5PN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.696
1g9r UPFLgtC / 0.695
2vkd UPGCytotoxin L / 0.669
3hav ATPAminoglycoside phosphotransferase / 0.669
1g93 UPGN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.657
1oqm UD2Beta-1,4-galactosyltransferase 1 / 0.657
3srz UPGToxin A / 0.654