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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1zaf 789 Estrogen receptor beta

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1zaf 789Estrogen receptor beta / 1.153
1u9e 397Estrogen receptor beta / 0.899
1x7j GENEstrogen receptor beta / 0.897
1qkm GENEstrogen receptor beta / 0.880
2nv7 555Estrogen receptor beta / 0.861
1x7b 041Estrogen receptor beta / 0.805
1x78 244Estrogen receptor beta / 0.794
4pp6 STLEstrogen receptor / 0.753
2jj3 JJ3Estrogen receptor beta / 0.743
1gwq ZTWEstrogen receptor / 0.722
1zky 689Estrogen receptor / 0.717
1s9p DESEstrogen-related receptor gamma / 0.716
1u3q 272Estrogen receptor beta / 0.683
2qa8 GENEstrogen receptor / 0.683
4zn7 DESEstrogen receptor / 0.681
4e5f 0N7Polymerase acidic protein / 0.663
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
3iro 2CYBifunctional dihydrofolate reductase-thymidylate synthase 1.5.1.3 0.660
4e5i 0N9Polymerase acidic protein / 0.660
1x76 697Estrogen receptor beta / 0.658
2iog IOGEstrogen receptor / 0.655