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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1z7e UGA Bifunctional polymyxin resistance protein ArnA

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1z7e UGABifunctional polymyxin resistance protein ArnA / 1.260
2c5e GDDGDP-mannose 3,5-epimerase 5.1.3.18 0.734
4bl5 GFBGDP-L-fucose synthase 1.1.1.271 0.664
2h39 ADQADP-glucose phosphorylase / 0.662
1i24 UPGUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.660
1qrr UPGUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.658
2gr2 APRFerredoxin reductase / 0.653