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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1yrd CAM Camphor 5-monooxygenase 1.14.15.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1yrd CAMCamphor 5-monooxygenase 1.14.15.1 0.827
2zax CAMCamphor 5-monooxygenase 1.14.15.1 0.822
3wrj CAMCamphor 5-monooxygenase 1.14.15.1 0.802
2zaw CAMCamphor 5-monooxygenase 1.14.15.1 0.801
2qbn CAMCamphor 5-monooxygenase 1.14.15.1 0.798
3wrm CAMCamphor 5-monooxygenase 1.14.15.1 0.798
3fwg CAMCamphor 5-monooxygenase 1.14.15.1 0.795
3fwf CAMCamphor 5-monooxygenase 1.14.15.1 0.793
1t85 CAMCamphor 5-monooxygenase 1.14.15.1 0.790
1dz4 CAMCamphor 5-monooxygenase 1.14.15.1 0.785
4l4a CAMCamphor 5-monooxygenase 1.14.15.1 0.780
2a1n CAMCamphor 5-monooxygenase 1.14.15.1 0.772
1t87 CAMCamphor 5-monooxygenase 1.14.15.1 0.767
2cpp CAMCamphor 5-monooxygenase 1.14.15.1 0.767
4g3r CAMCamphor 5-monooxygenase 1.14.15.1 0.767
5cp4 CAMCamphor 5-monooxygenase 1.14.15.1 0.766
4l4b CAMCamphor 5-monooxygenase 1.14.15.1 0.764
1dz6 CAMCamphor 5-monooxygenase 1.14.15.1 0.758
1o76 CAMCamphor 5-monooxygenase 1.14.15.1 0.756
3l63 CAMCamphor 5-monooxygenase 1.14.15.1 0.750
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
2puc GUNHTH-type transcriptional repressor PurR / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
4l4c CAMCamphor 5-monooxygenase 1.14.15.1 0.744
1dz8 CAMCamphor 5-monooxygenase 1.14.15.1 0.741
2a1m CAMCamphor 5-monooxygenase 1.14.15.1 0.741
3fwj CAMCamphor 5-monooxygenase 1.14.15.1 0.736
3wrl CAMCamphor 5-monooxygenase 1.14.15.1 0.736
2feu CAMCamphor 5-monooxygenase 1.14.15.1 0.734
2a1o CAMCamphor 5-monooxygenase 1.14.15.1 0.728
2z97 CAMCamphor 5-monooxygenase 1.14.15.1 0.722
1uyu CAMCamphor 5-monooxygenase 1.14.15.1 0.721
4cp4 CAMCamphor 5-monooxygenase 1.14.15.1 0.721
4l4e CAMCamphor 5-monooxygenase 1.14.15.1 0.721
3fwi CAMCamphor 5-monooxygenase 1.14.15.1 0.719
4ek1 CAMCamphor 5-monooxygenase 1.14.15.1 0.719
4l4f CAMCamphor 5-monooxygenase 1.14.15.1 0.677
3lxi CAMCytochrome P450 / 0.665
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2qbl CAMCamphor 5-monooxygenase 1.14.15.1 0.654