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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1yq7 RIS Farnesyl pyrophosphate synthase 2.5.1.10

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1yq7 RISFarnesyl pyrophosphate synthase 2.5.1.10 0.899
4nke RISFarnesyl pyrophosphate synthase 2.5.1.10 0.804
1yv5 RISFarnesyl pyrophosphate synthase 2.5.1.10 0.798
4kqs RISFarnesyl pyrophosphate synthase 2.5.1.10 0.796
4h5c YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.786
4h5e YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.786
4h5d YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.784
4lfv YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.781
1rqj RISFarnesyl diphosphate synthase 2.5.1.10 0.775
4q23 RISFarnesyl pyrophosphate synthase 2.5.1.10 0.773
4dem YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.750
3rye UNRFarnesyl pyrophosphate synthase 2.5.1.10 0.744
4dwb 0M7Farnesyl pyrophosphate synthase / 0.739
3icz PB6Farnesyl pyrophosphate synthase / 0.733
2f94 BFQFarnesyl pyrophosphate synthase 2.5.1.10 0.728
3ldw ZOLFarnesyl pyrophosphate synthase, putative / 0.724
1zw5 ZOLFarnesyl pyrophosphate synthase 2.5.1.10 0.720
4l2x YL2Farnesyl pyrophosphate synthase 2.5.1.10 0.694
2e95 B75Geranylgeranyl pyrophosphate synthase / 0.691
4ga3 4GAFarnesyl pyrophosphate synthase 2.5.1.10 0.687
1mb9 ATPCarboxyethyl-arginine beta-lactam-synthase 6.3.3.4 0.686
1dtn APGMandelate racemase / 0.684
3ez3 ZOLFarnesyl pyrophosphate synthase, putative / 0.684
1mdl SMNMandelate racemase / 0.675
3ar6 12DSarcoplasmic/endoplasmic reticulum calcium ATPase 1 3.6.3.8 0.664
4dxj 0M9Farnesyl pyrophosphate synthase / 0.661
1wua ATPActin, alpha skeletal muscle / 0.658
2q36 ATPActin, alpha skeletal muscle / 0.654
2gs7 ANPEpidermal growth factor receptor 2.7.10.1 0.650
4pki ATPActin, alpha skeletal muscle / 0.650