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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ykg FMN Sulfite reductase [NADPH] flavoprotein alpha-component

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ykg FMNSulfite reductase [NADPH] flavoprotein alpha-component / 0.979
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.719
3ojw FMNNADPH--cytochrome P450 reductase / 0.675
3ojx FMNNADPH--cytochrome P450 reductase / 0.674
2fcr FMNFlavodoxin / 0.666
1akw FMNFlavodoxin / 0.663
1ja0 FMNNADPH--cytochrome P450 reductase / 0.662
2bn4 FMNNADPH--cytochrome P450 reductase / 0.658
2fx2 FMNFlavodoxin / 0.655
1j8q FMNFlavodoxin / 0.653
4bmo FMNProtein NrdI / 0.653
4yao FMNNADPH--cytochrome P450 reductase / 0.652