Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1yin CM3 Estrogen receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1yin CM3Estrogen receptor / 1.482
1yim CM4Estrogen receptor / 1.099
1xpc AITEstrogen receptor / 1.046
1xp9 AIJEstrogen receptor / 1.018
1sj0 E4DEstrogen receptor / 1.003
1xp6 AIUEstrogen receptor / 0.990
1uom PTIEstrogen receptor / 0.887
1xp1 AIHEstrogen receptor / 0.745
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4iw6 1GUEstrogen receptor / 0.742
2ouz C3DEstrogen receptor / 0.728
1xqc AEJEstrogen receptor / 0.719
2jf9 OHTEstrogen receptor / 0.716
4iv4 1GSEstrogen receptor / 0.715
2fsz OHTEstrogen receptor beta / 0.704
2jfa RALEstrogen receptor / 0.701
2ayr L4GEstrogen receptor / 0.687
3ert OHTEstrogen receptor / 0.687
1qkn RALEstrogen receptor beta / 0.665
4e5f 0N7Polymerase acidic protein / 0.660
2bj4 OHTEstrogen receptor / 0.654