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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1yim CM4 Estrogen receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1yim CM4Estrogen receptor / 1.412
1xp9 AIJEstrogen receptor / 1.230
1xp6 AIUEstrogen receptor / 1.181
1xp1 AIHEstrogen receptor / 1.160
1xpc AITEstrogen receptor / 1.158
1yin CM3Estrogen receptor / 1.099
1sj0 E4DEstrogen receptor / 1.073
2jfa RALEstrogen receptor / 0.868
1uom PTIEstrogen receptor / 0.858
1xqc AEJEstrogen receptor / 0.852
1err RALEstrogen receptor / 0.835
2ouz C3DEstrogen receptor / 0.804
2jf9 OHTEstrogen receptor / 0.755
1qkn RALEstrogen receptor beta / 0.750
4iw6 1GUEstrogen receptor / 0.744
2fsz OHTEstrogen receptor beta / 0.721
2bj4 OHTEstrogen receptor / 0.714
4iu7 1GMEstrogen receptor / 0.707
4ivw 1GJEstrogen receptor / 0.687
2qe4 JJ3Estrogen receptor / 0.682
4e5f 0N7Polymerase acidic protein / 0.660
4iv4 1GSEstrogen receptor / 0.656
1s9q OHTEstrogen-related receptor gamma / 0.651
4j3l AJ5Tankyrase-2 2.4.2.30 0.650