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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1yda AZM Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1yda AZMCarbonic anhydrase 2 4.2.1.1 0.782
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
2puc GUNHTH-type transcriptional repressor PurR / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.699
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.698
4ykl GMPAprataxin-like protein 3 0.696
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.684
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.678
3dcs MZMCarbonic anhydrase 2 4.2.1.1 0.669
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.666
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.662
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2fr8 NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.659
5iu8 6DZAdenosine receptor A2a / 0.659
1m8e H4BNitric oxide synthase, inducible 1.14.13.39 0.658
3dcc D9ZCarbonic anhydrase 2 4.2.1.1 0.658
1bnu AL3Carbonic anhydrase 2 4.2.1.1 0.656
4blt APCNTPase P4 / 0.656
4k0z MZMCarbonic anhydrase 2 4.2.1.1 0.656
3kig DA4Carbonic anhydrase 2 4.2.1.1 0.655
3djf BC3Purine nucleoside phosphorylase / 0.654
3mhl J71Carbonic anhydrase 2 4.2.1.1 0.654
3nb5 R21Carbonic anhydrase 2 4.2.1.1 0.653
4ewv APC4-substituted benzoates-glutamate ligase GH3.12 6.3.2 0.653
4y3j HICEndothiapepsin 3.4.23.22 0.652
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.651