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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1y91 CT9 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1y91 CT9Cyclin-dependent kinase 2 2.7.11.22 1.143
3pj8 404Cyclin-dependent kinase 2 2.7.11.22 0.745
3dog NNNCyclin-dependent kinase 2 2.7.11.22 0.744
2a0c CK9Cyclin-dependent kinase 2 2.7.11.22 0.716
2a4l RRCCyclin-dependent kinase 2 2.7.11.22 0.716
4fkp LS5Cyclin-dependent kinase 2 2.7.11.22 0.715
3ddq RRCCyclin-dependent kinase 2 2.7.11.22 0.714
1v0p PVBCell division control protein 2 homolog 2.7.11.22 0.710
1ke8 LS4Cyclin-dependent kinase 2 2.7.11.22 0.709
2r3m SCXCyclin-dependent kinase 2 2.7.11.22 0.709
1g5s I17Cyclin-dependent kinase 2 2.7.11.22 0.703
1unl RRCCyclin-dependent-like kinase 5 2.7.11.1 0.699
1y8y CT7Cyclin-dependent kinase 2 2.7.11.22 0.696
1ckp PVBCyclin-dependent kinase 2 2.7.11.22 0.694
3ezr EZRCyclin-dependent kinase 2 2.7.11.22 0.686
3uli 1N3Cyclin-dependent kinase 2 2.7.11.22 0.684
3wbl PDYCyclin-dependent kinase 2 2.7.11.22 0.680
2r3l SCWCyclin-dependent kinase 2 2.7.11.22 0.679
1ke7 LS3Cyclin-dependent kinase 2 2.7.11.22 0.678
4fkg 4CKCyclin-dependent kinase 2 2.7.11.22 0.673
2c6l DT4Cyclin-dependent kinase 2 2.7.11.22 0.672
2wpa 889Cyclin-dependent kinase 2 2.7.11.22 0.672
2btr U73Cyclin-dependent kinase 2 2.7.11.22 0.669
2r3o 2SCCyclin-dependent kinase 2 2.7.11.22 0.669
2wxv WXVCyclin-dependent kinase 2 2.7.11.22 0.669
3rkb 12ZCyclin-dependent kinase 2 2.7.11.22 0.669
3ddp RC8Cyclin-dependent kinase 2 2.7.11.22 0.666
3igg EFQCyclin-dependent kinase 2 2.7.11.22 0.666
4lyn 1YGCyclin-dependent kinase 2 2.7.11.22 0.666
2vtp LZ9Cyclin-dependent kinase 2 2.7.11.22 0.665
2r3k SCQCyclin-dependent kinase 2 2.7.11.22 0.662
3lq5 SLQCyclin-dependent kinase 9 2.7.11.22 0.662
2r3j SCJCyclin-dependent kinase 2 2.7.11.22 0.660
1gih 1PUCyclin-dependent kinase 2 2.7.11.22 0.659
2wih P48Cyclin-dependent kinase 2 2.7.11.22 0.659
2vts LZCCyclin-dependent kinase 2 2.7.11.22 0.657
1w0x OLOCyclin-dependent kinase 2 2.7.11.22 0.656
4ek6 10KCyclin-dependent kinase 2 2.7.11.22 0.654
2c6k DT2Cyclin-dependent kinase 2 2.7.11.22 0.651