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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1y8y CT7 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1y8y CT7Cyclin-dependent kinase 2 2.7.11.22 0.889
2c6l DT4Cyclin-dependent kinase 2 2.7.11.22 0.794
2c6k DT2Cyclin-dependent kinase 2 2.7.11.22 0.734
4fkp LS5Cyclin-dependent kinase 2 2.7.11.22 0.713
2c6m DT5Cyclin-dependent kinase 2 2.7.11.22 0.712
1urw I1PCyclin-dependent kinase 2 2.7.11.22 0.706
1y91 CT9Cyclin-dependent kinase 2 2.7.11.22 0.696
2vtl LZ5Cyclin-dependent kinase 2 2.7.11.22 0.695
1ke8 LS4Cyclin-dependent kinase 2 2.7.11.22 0.691
4fkt 48KCyclin-dependent kinase 2 2.7.11.22 0.691
2vtr LZBCyclin-dependent kinase 2 2.7.11.22 0.690
2r3q 5SCCyclin-dependent kinase 2 2.7.11.22 0.680
2c6t DT5Cyclin-dependent kinase 2 2.7.11.22 0.679
3wbl PDYCyclin-dependent kinase 2 2.7.11.22 0.678
2wxv WXVCyclin-dependent kinase 2 2.7.11.22 0.677
2vtp LZ9Cyclin-dependent kinase 2 2.7.11.22 0.674
3r9h Z67Cyclin-dependent kinase 2 2.7.11.22 0.674
2vtn LZ7Cyclin-dependent kinase 2 2.7.11.22 0.672
2bts U32Cyclin-dependent kinase 2 2.7.11.22 0.666
2xmy CDKCyclin-dependent kinase 2 2.7.11.22 0.666
4fkr 45KCyclin-dependent kinase 2 2.7.11.22 0.664
4fks 46KCyclin-dependent kinase 2 2.7.11.22 0.664
3r9d X6BCyclin-dependent kinase 2 2.7.11.22 0.659
2c6o 4SPCyclin-dependent kinase 2 2.7.11.22 0.658
2c68 CT6Cyclin-dependent kinase 2 2.7.11.22 0.657
2iw8 4SPCyclin-dependent kinase 2 2.7.11.22 0.657
3s1h 56ZCyclin-dependent kinase 2 2.7.11.22 0.655
3r9o Z71Cyclin-dependent kinase 2 2.7.11.22 0.654
2vto LZ8Cyclin-dependent kinase 2 2.7.11.22 0.653
1ke7 LS3Cyclin-dependent kinase 2 2.7.11.22 0.650
1oit HDTCyclin-dependent kinase 2 2.7.11.22 0.650
2vtq LZACyclin-dependent kinase 2 2.7.11.22 0.650