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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1y5w NEZ Queuine tRNA-ribosyltransferase 2.4.2.29

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1y5w NEZQueuine tRNA-ribosyltransferase 2.4.2.29 1.022
3gc5 2MQQueuine tRNA-ribosyltransferase 2.4.2.29 0.815
1y5x E89Queuine tRNA-ribosyltransferase 2.4.2.29 0.803
3gc4 AAQQueuine tRNA-ribosyltransferase 2.4.2.29 0.801
4fps 0UXQueuine tRNA-ribosyltransferase 2.4.2.29 0.799
4gkt 0O1Queuine tRNA-ribosyltransferase 2.4.2.29 0.799
4fr1 0V2Queuine tRNA-ribosyltransferase 2.4.2.29 0.798
3ge7 AFQQueuine tRNA-ribosyltransferase 2.4.2.29 0.791
4gi4 0EXQueuine tRNA-ribosyltransferase 2.4.2.29 0.791
4q8p CKRQueuine tRNA-ribosyltransferase 2.4.2.29 0.791
4fsa 0V3Queuine tRNA-ribosyltransferase 2.4.2.29 0.781
3sm0 AEKQueuine tRNA-ribosyltransferase 2.4.2.29 0.772
4giy 0WYQueuine tRNA-ribosyltransferase 2.4.2.29 0.772
1q63 AIQQueuine tRNA-ribosyltransferase 2.4.2.29 0.765
1y5v NE8Queuine tRNA-ribosyltransferase 2.4.2.29 0.756
2qzr S79Queuine tRNA-ribosyltransferase 2.4.2.29 0.752
1q4w DQUQueuine tRNA-ribosyltransferase 2.4.2.29 0.729
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.727
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.694
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.680
1f3e DPZQueuine tRNA-ribosyltransferase 2.4.2.29 0.674
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.669
4gh3 0EVQueuine tRNA-ribosyltransferase 2.4.2.29 0.665
4e5i 0N9Polymerase acidic protein / 0.660
4e5f 0N7Polymerase acidic protein / 0.659