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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1y52 BTN Avidin-related protein 4/5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1y52 BTNAvidin-related protein 4/5 / 1.048
4bcs BTNAvidin-related protein 4/5 / 1.004
2fhl BNIAvidin-related protein 4/5 / 1.003
2fhn BNIAvidin-related protein 4/5 / 1.000
2uyw BTNAvd protein / 0.998
3vgw NVZAvidin / 0.921
2c4i BTNAvidin / 0.906
2rte BTNStreptavidin / 0.888
4gda BTNStreptavidin / 0.888
2y3f BTNStreptavidin / 0.883
2izh BTNStreptavidin / 0.879
2izg BTNStreptavidin / 0.877
2izf BTNStreptavidin / 0.874
2rtf BTNStreptavidin / 0.873
3ry2 BTNStreptavidin / 0.867
4dne DTBStreptavidin / 0.867
2jgs BTNAvidin / 0.866
3vhi VHIAvidin / 0.860
1i9h BNIStreptavidin / 0.859
2rtd BTNStreptavidin / 0.859
2zsc BTNTamavidin2 / 0.857
1lcw SHMStreptavidin / 0.856
3wyp BSOStreptavidin / 0.855
2rtg BTNStreptavidin / 0.850
3wyq BTNStreptavidin / 0.850
1swe BTNStreptavidin / 0.849
1mk5 BTNStreptavidin / 0.847
4yvb BTNStreptavidin / 0.846
2izi BTNStreptavidin / 0.843
2izj BTNStreptavidin / 0.840
3wzn BTNStreptavidin / 0.838
1nqm BTNStreptavidin / 0.831
4bj8 BTNAvidin / 0.830
3ew2 BTNHypothetical conserved protein / 0.827
1n9m BTNStreptavidin / 0.824
4gd9 BTNStreptavidin / 0.823
2uz2 BTNAvd protein / 0.815
4bx7 B4FStreptavidin / 0.811
3rdo BTNStreptavidin / 0.803
1stp BTNStreptavidin / 0.801
1luq BTNStreptavidin / 0.798
1swp BTNStreptavidin / 0.792
1swt BTNStreptavidin / 0.790
2izl IMIStreptavidin / 0.782
1ndj BTNStreptavidin / 0.780
3t2w BTNAvidin/streptavidin / 0.780
1rxh BNIStreptavidin / 0.779
1swg BTNStreptavidin / 0.779
1df8 BTNStreptavidin / 0.778
1swn BTNStreptavidin / 0.776
1mep BTNStreptavidin / 0.765
4z28 BTNHoefavidin / 0.765
2rto IMIStreptavidin / 0.758
4ggz BTNBll1558 protein / 0.754
1lcz BH7Streptavidin / 0.747
1swr BTNStreptavidin / 0.747
1rxj BNIStreptavidin / 0.743
2rtm IMIStreptavidin / 0.735
1nc9 IMIStreptavidin / 0.731
1ij8 BNIAvidin / 0.718
2avi BTNAvidin / 0.707
1swp BTQStreptavidin / 0.701
2rtq IMIStreptavidin / 0.701
3vhm NPKAvidin / 0.698
2rtn IMIStreptavidin / 0.695
3rdq DTBStreptavidin / 0.686
1swd BTNStreptavidin / 0.683
4dve BTNBiotin transporter BioY / 0.681
2rtp IMIStreptavidin / 0.670
2rtl IMIStreptavidin / 0.669
1ldq SHMAvidin / 0.667
2nmt NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.657
2rtk GLLStreptavidin / 0.654