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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1xq6 NAP Uncharacterized protein At5g02240

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1xq6 NAPUncharacterized protein At5g02240 / 1.332
1ybm NAPUncharacterized protein At5g02240 / 1.170
2q46 NAPUncharacterized protein At5g02240 / 1.022
2q4b NAPUncharacterized protein At5g02240 / 0.881
2ggs NDPdTDP-4-dehydrorhamnose reductase / 0.702
3e8x NAPBH1520 protein / 0.701
3h2s NDPPutative NADH-flavin reductase / 0.694
2q1u NADPutative nucleotide sugar epimerase/ dehydratase / 0.691
2dt5 NADRedox-sensing transcriptional repressor Rex / 0.688
1u7h NADPutative ornithine cyclodeaminase / 0.679
2q1s NAIPutative nucleotide sugar epimerase/ dehydratase / 0.678
4clo NAPPteridine reductase / 0.676
2c54 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.675
2vrb NAPTriphenylmethane reductase / 0.672
2b69 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.671
3bmo NAPPteridine reductase / 0.671
4e5n NADPhosphonate dehydrogenase 1.20.1.1 0.670
5bt9 NAP3-oxoacyl-(Acyl-carrier-protein) reductase / 0.670
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.667
1w73 NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.665
5kjc NAJAlcohol dehydrogenase E chain 1.1.1.1 0.665
4xd2 NAIAlcohol dehydrogenase E chain 1.1.1.1 0.664
1adc PADAlcohol dehydrogenase E chain 1.1.1.1 0.662
1pr9 NAPL-xylulose reductase 1.1.1.10 0.662
1wwk NAD307aa long hypothetical phosphoglycerate dehydrogenase / 0.662
3pvz NADUDP-N-acetylglucosamine 4,6-dehydratase / 0.661
1x7d NADPutative ornithine cyclodeaminase / 0.660
2yut NAPPutative short-chain oxidoreductase / 0.658
3aw9 NADNAD-dependent epimerase/dehydratase / 0.658
3h3j NADL-lactate dehydrogenase 1 1.1.1.27 0.658
3ko8 NADNAD-dependent epimerase/dehydratase / 0.658
3p62 FMNPentaerythritol tetranitrate reductase / 0.658
3ru7 NADUDP-N-acetylglucosamine 4-epimerase / 0.658
4id9 NADPutative UDP-glucose 4-epimerase / 0.657
2hun NAD336aa long hypothetical dTDP-glucose 4,6-dehydratase / 0.656
2ixa NADAlpha-N-acetylgalactosaminidase 3.2.1.49 0.656
3rua NADUDP-N-acetylglucosamine 4-epimerase / 0.656
3tqh NDPQuinone oxidoreductase / 0.656
5lc1 NADL-threonine 3-dehydrogenase / 0.656
3baz NAPHydroxyphenylpyruvate reductase 1.1.1.237 0.655
4idg NADPutative UDP-glucose 4-epimerase / 0.653
2fn7 NADLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase / 0.652
4c4o NADSADH / 0.652
4l4x NDPAmphI / 0.652
5env NADAlcohol dehydrogenase 1 1.1.1.1 0.652
3ehe NADUDP-glucose 4-epimerase (GalE-1) / 0.651
4gkv NADAlcohol dehydrogenase, propanol-preferring 1.1.1.1 0.651
4j7x NAPSepiapterin reductase 1.1.1.153 0.651
1g1a NADdTDP-glucose 4,6-dehydratase / 0.650
1o6z NADMalate dehydrogenase / 0.650
3ru9 NADUDP-N-acetylglucosamine 4-epimerase / 0.650
4u7w NDPMxaA / 0.650