sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1xmv | ADP | Protein RecA |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1xmv | ADP | Protein RecA | / | 1.052 | |
| 1xp8 | AGS | Protein RecA | / | 0.850 | |
| 2zro | ADP | Protein RecA | / | 0.847 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.826 | |
| 2zts | ADP | Uncharacterized protein | / | 0.820 | |
| 4lrw | GDP | GTPase KRas | / | 0.817 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.815 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.815 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.815 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.815 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.813 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.812 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.812 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.812 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.811 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.811 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.811 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.810 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.808 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.807 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.804 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.803 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.802 | |
| 2zrj | AGS | Protein RecA | / | 0.802 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.801 | |
| 4dsu | GDP | GTPase KRas | / | 0.801 | |
| 4lpk | GDP | GTPase KRas | / | 0.800 | |
| 4luc | GDP | GTPase KRas | / | 0.800 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.799 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.799 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.798 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.796 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.796 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.795 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.795 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.795 | |
| 1xms | ANP | Protein RecA | / | 0.794 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.794 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.793 | |
| 4yer | ADP | Antibiotic ABC transporter, ATP-binding protein, putative | / | 0.793 | |
| 4l8g | GDP | GTPase KRas | / | 0.792 | |
| 2fgj | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.791 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.791 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.790 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.790 | |
| 4obe | GDP | GTPase KRas | / | 0.790 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.789 | |
| 4l9s | GDP | GTPase HRas | / | 0.789 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.788 | |
| 4epw | GDP | GTPase KRas | / | 0.788 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.788 | |
| 4ihq | ADP | Conserved Archaeal protein | / | 0.787 | |
| 4q02 | GDP | GTPase KRas | / | 0.787 | |
| 4ql3 | GDP | GTPase KRas | / | 0.787 | |
| 4d81 | ADP | AAA ATPase, central domain protein | / | 0.786 | |
| 4q03 | GDP | GTPase KRas | / | 0.786 | |
| 4tq9 | GDP | GTPase KRas | / | 0.786 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.785 | |
| 4ldj | GDP | GTPase KRas | / | 0.785 | |
| 4lv6 | GDP | GTPase KRas | / | 0.785 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.785 | |
| 5cyo | GDP | Septin-9 | / | 0.785 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.784 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.784 | |
| 4epx | GDP | GTPase KRas | / | 0.784 | |
| 4wa7 | GDP | GTPase KRas | / | 0.784 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.783 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.783 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.782 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.782 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.782 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.782 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.781 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.781 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.781 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.779 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.779 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.779 | |
| 3l9h | ADP | Kinesin-like protein KIF11 | / | 0.778 | |
| 3qpv | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.778 | |
| 4tl8 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.778 | |
| 1njf | ADP | DNA polymerase III subunit tau | 2.7.7.7 | 0.777 | |
| 2o8b | ADP | DNA mismatch repair protein Msh2 | / | 0.777 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.777 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.777 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.776 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.776 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.775 | |
| 4zca | ADP | Kinesin-like protein KIF11 | / | 0.775 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.774 | |
| 4ag5 | ADP | Type IV secretory pathway VirB4 components-like protein | / | 0.774 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.774 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 0.773 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.772 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.772 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.772 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.772 | |
| 1yrs | ADP | Kinesin-like protein KIF11 | / | 0.771 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.771 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.771 | |
| 4tlb | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.771 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.769 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.769 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.768 | |
| 3ref | GDP | Rho family GTPase | / | 0.768 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.768 | |
| 3kud | GDP | GTPase HRas | / | 0.766 | |
| 3r9i | ADP | Septum site-determining protein MinD | / | 0.766 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.766 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.765 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.764 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.764 | |
| 2ce2 | GDP | GTPase HRas | / | 0.763 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.763 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.763 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.763 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 0.763 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.762 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.762 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.762 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.761 | |
| 4ww0 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.761 | |
| 4yqf | GDP | Septin-9 | / | 0.761 | |
| 5fl3 | ADP | Pili retraction protein PilT | / | 0.761 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.760 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 0.760 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.760 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.760 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 0.760 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.759 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 0.759 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.758 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.758 | |
| 1ake | AP5 | Adenylate kinase | / | 0.757 | |
| 3ftq | GNP | Septin-2 | / | 0.757 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.757 | |
| 4tlc | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.757 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.756 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.755 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.755 | |
| 2fna | ADP | Uncharacterized protein | / | 0.755 | |
| 4dso | GSP | GTPase KRas | / | 0.755 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.754 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.754 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.754 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.754 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.753 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.753 | |
| 4k81 | GTP | GTPase HRas | / | 0.753 | |
| 1w5t | ADP | ORC1-type DNA replication protein 2 | / | 0.752 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.751 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.751 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.751 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.751 | |
| 3tif | ADP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.751 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.750 | |
| 3d8b | ADP | Fidgetin-like protein 1 | 3.6.4 | 0.750 | |
| 4g0n | GNP | GTPase HRas | / | 0.750 | |
| 1bif | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.749 | |
| 2iut | AGS | DNA translocase FtsK | / | 0.749 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.748 | |
| 2olr | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.748 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.747 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.747 | |
| 5irn | ADP | Nucleotide binding oligomerization domain containing 2 | / | 0.747 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.745 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.745 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.745 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.745 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.744 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 0.744 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 0.744 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.744 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.744 | |
| 3l1c | ADP | Protein claret segregational | / | 0.744 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.744 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.744 | |
| 4iok | ADP | Formate--tetrahydrofolate ligase | / | 0.744 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.743 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.742 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.742 | |
| 2dr3 | ADP | UPF0273 protein PH0284 | / | 0.742 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.742 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.741 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.741 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.741 | |
| 3fvq | ATP | Fe(3+) ions import ATP-binding protein FbpC | / | 0.741 | |
| 4tl7 | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.741 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.741 | |
| 5bn3 | ADP | NEQ263 | / | 0.741 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.740 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.740 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.740 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.740 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.740 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.738 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.738 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 0.738 | |
| 3tgp | GNP | GTPase HRas | / | 0.738 | |
| 4mkh | AP5 | Adenylate kinase | / | 0.738 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.737 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.737 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 0.737 | |
| 3oes | GNP | GTPase RhebL1 | / | 0.737 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 0.737 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.736 | |
| 2ax4 | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 | 2.7.1.25 | 0.735 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.735 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.734 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.734 | |
| 4db1 | ANP | Myosin-7 | / | 0.734 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.734 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.733 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.733 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.733 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.733 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.733 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.732 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.732 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.732 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.731 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.731 | |
| 2eck | ADP | Adenylate kinase | / | 0.731 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.731 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.731 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.731 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.731 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 0.730 | |
| 3qbv | GDP | Cell division control protein 42 homolog | / | 0.730 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.730 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.729 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.729 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.729 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 0.729 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.729 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.729 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.729 | |
| 3oiu | GNP | GTPase HRas | / | 0.728 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 0.728 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.727 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.727 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.727 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.727 | |
| 2rgb | GNP | GTPase HRas | / | 0.727 | |
| 3ddc | GNP | GTPase HRas | / | 0.727 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 0.727 | |
| 3i3s | GNP | GTPase HRas | / | 0.727 | |
| 3v4f | GNP | GTPase HRas | / | 0.727 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 0.727 | |
| 2rge | GNP | GTPase HRas | / | 0.726 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.726 | |
| 3k8y | GNP | GTPase HRas | / | 0.726 | |
| 3rs4 | GNP | GTPase HRas | / | 0.726 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.726 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 0.726 | |
| 4dlt | GNP | GTPase HRas | / | 0.726 | |
| 4dlv | GNP | GTPase HRas | / | 0.726 | |
| 4l9w | GNP | GTPase HRas | / | 0.726 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 0.726 | |
| 5b2z | GNP | GTPase HRas | / | 0.726 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.726 | |
| 1kmq | GNP | Transforming protein RhoA | / | 0.725 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.725 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.725 | |
| 3l8y | GNP | GTPase HRas | / | 0.725 | |
| 3oiw | GNP | GTPase HRas | / | 0.725 | |
| 3rs0 | GNP | GTPase HRas | / | 0.725 | |
| 3rs5 | GNP | GTPase HRas | / | 0.725 | |
| 3rs7 | GNP | GTPase HRas | / | 0.725 | |
| 3rsl | GNP | GTPase HRas | / | 0.725 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.725 | |
| 1r0z | ATP | Cystic fibrosis transmembrane conductance regulator | / | 0.724 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.724 | |
| 3lbn | GNP | GTPase HRas | / | 0.724 | |
| 4dlw | GNP | GTPase HRas | / | 0.724 | |
| 4dlx | GNP | GTPase HRas | / | 0.724 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.724 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.723 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.723 | |
| 3oiv | GNP | GTPase HRas | / | 0.723 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.723 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.722 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.721 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.721 | |
| 4xvr | GNP | GTPase HRas | / | 0.721 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.720 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.720 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.720 | |
| 3lbh | GNP | GTPase HRas | / | 0.720 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.720 | |
| 1sxj | ADP | Replication factor C subunit 5 | / | 0.719 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.719 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.719 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.717 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.717 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.717 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.717 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.717 | |
| 4jky | ADP | Adenylate kinase | / | 0.715 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.714 | |
| 2cl6 | CAG | GTPase HRas | / | 0.714 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.713 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.713 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.713 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.713 | |
| 5ftf | ADP | TPR domain protein | / | 0.713 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.712 | |
| 2fgk | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.711 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.711 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.711 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.710 | |
| 1e4y | AP5 | Adenylate kinase | / | 0.709 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.709 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.709 | |
| 2vos | ADP | Folylpolyglutamate synthase | / | 0.709 | |
| 4qbi | AP5 | Adenylate kinase | / | 0.709 | |
| 5ftc | ADP | TPR domain protein | / | 0.709 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.708 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.708 | |
| 1ank | ANP | Adenylate kinase | / | 0.707 | |
| 1svl | ADP | Large T antigen | 3.6.4 | 0.707 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.706 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.706 | |
| 1nly | AGS | Cag alpha | / | 0.706 | |
| 3lbi | GNP | GTPase HRas | / | 0.706 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.705 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.705 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.705 | |
| 3ieu | GDP | GTPase Era | / | 0.705 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.703 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.702 | |
| 4ww4 | ADP | RuvB-like helicase | / | 0.702 | |
| 2xsz | ATP | RuvB-like 2 | 3.6.4.12 | 0.701 | |
| 3thy | ADP | DNA mismatch repair protein Msh2 | / | 0.701 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.701 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.700 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.700 | |
| 4ike | ADP | Adenylate kinase | / | 0.700 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.699 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 0.699 | |
| 4dsn | GCP | GTPase KRas | / | 0.698 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.698 | |
| 2ql6 | ADP | Nicotinamide riboside kinase 1 | / | 0.697 | |
| 1svm | ATP | Large T antigen | 3.6.4 | 0.695 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.694 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.694 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.693 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.691 | |
| 4a51 | ADP | Kinesin-like protein KIF11 | / | 0.691 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.690 | |
| 4rz3 | ADP | Site-determining protein | / | 0.690 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.690 | |
| 1lfd | GNP | GTPase HRas | / | 0.689 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.689 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.688 | |
| 4ma4 | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.688 | |
| 1k6m | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1 | 2.7.1.105 | 0.687 | |
| 1l2t | ATP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.687 | |
| 3k3b | ADP | Kinesin-like protein KIF11 | / | 0.687 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.686 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.685 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.685 | |
| 2d4h | 5GP | Guanylate-binding protein 1 | / | 0.684 | |
| 4jlo | ADP | Adenylate kinase | / | 0.684 | |
| 5dac | AGS | Uncharacterized protein | / | 0.684 | |
| 2q2z | ADP | Kinesin-like protein KIF11 | / | 0.683 | |
| 4e03 | ADP | Plasmid partitioning protein ParF | / | 0.683 | |
| 4jld | ADP | Adenylate kinase | / | 0.683 | |
| 1im2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.682 | |
| 1ohh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.681 | |
| 1ohh | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.681 | |
| 4qnr | ATP | Psp operon transcriptional activator | / | 0.681 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.680 | |
| 5cyp | GSP | Septin-9 | / | 0.680 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.679 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 0.678 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 0.676 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.676 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.676 | |
| 3vtk | ADP | Thymidine kinase | / | 0.676 | |
| 4cvm | ANP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.676 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.675 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.675 | |
| 1n6m | ADP | Protein claret segregational | / | 0.673 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.673 | |
| 4o3m | ADP | Bloom syndrome protein | 3.6.4.12 | 0.673 | |
| 2vf7 | ADP | UvrABC system protein A | / | 0.672 | |
| 3bxz | ADP | Protein translocase subunit SecA | / | 0.672 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.672 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.670 | |
| 4xvq | GNP | GTPase HRas | / | 0.670 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.669 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.669 | |
| 2zsa | ADP | Pantothenate kinase | 2.7.1.33 | 0.665 | |
| 4ohw | ATP | Protein clpf-1 | / | 0.665 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.664 | |
| 3kji | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.664 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.664 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.664 | |
| 4rzu | ADP | Probable thymidylate kinase | 2.7.4.9 | 0.663 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.662 | |
| 4hut | ATP | Cob(I)yrinic acid a,c-diamide adenosyltransferase | 2.5.1.17 | 0.662 | |
| 4uxj | TTP | Thymidine kinase | / | 0.662 | |
| 2pc9 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.661 | |
| 4ys0 | ADP | Protein translocase subunit SecA | / | 0.661 | |
| 2axn | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | / | 0.660 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.660 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.660 | |
| 1xd9 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.659 | |
| 4yal | 2AM | NADPH--cytochrome P450 reductase | / | 0.659 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.658 | |
| 2gbl | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.658 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.658 | |
| 3nbx | ADP | ATPase RavA | 3.6.3 | 0.658 | |
| 4dvg | GSP | Rho family GTPase | / | 0.658 | |
| 4yaw | 2AM | NADPH--cytochrome P450 reductase | / | 0.658 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.657 | |
| 4fvq | ATP | Tyrosine-protein kinase JAK2 | / | 0.657 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.657 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.656 | |
| 2zr9 | DTP | Protein RecA | / | 0.655 | |
| 4yaf | 2AM | NADPH--cytochrome P450 reductase | / | 0.655 | |
| 1ht2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.654 | |
| 1w7k | ADP | Dihydrofolate synthase/folylpolyglutamate synthase | 6.3.2.12 | 0.653 | |
| 2iuu | ADP | DNA translocase FtsK | / | 0.653 | |
| 3k1j | ADP | ATP-dependent protease Lon | / | 0.653 | |
| 3qe2 | NAP | NADPH--cytochrome P450 reductase | / | 0.653 | |
| 4dlz | GNP | GTPase HRas | / | 0.653 | |
| 4iei | ADP | Gene 2 protein | / | 0.653 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.652 | |
| 3e9h | KAA | Lysine--tRNA ligase | 6.1.1.6 | 0.652 | |
| 1xkv | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.651 | |
| 3zl8 | ADP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.651 | |
| 1h8h | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.650 | |
| 1h8h | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.650 | |
| 2py7 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.650 |