Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1xjw | PAL | Aspartate carbamoyltransferase catalytic subunit | 2.1.3.2 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1xjw | PAL | Aspartate carbamoyltransferase catalytic subunit | 2.1.3.2 | 1.133 | |
| 8atc | PAL | Aspartate carbamoyltransferase catalytic subunit | 2.1.3.2 | 0.896 | |
| 3m4n | PA9 | N-acetylornithine carbamoyltransferase | 2.1.3.9 | 0.718 | |
| 4h2i | A12 | 5'-nucleotidase | 3.1.3.5 | 0.658 |