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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1xjq ADP Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 2.7.1.25

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1xjq ADPBifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 2.7.1.25 1.070
1jed ADPSulfate adenylyltransferase / 0.788
1p9b IMOAdenylosuccinate synthetase / 0.670
4eak ATP5'-AMP-activated protein kinase subunit gamma-1 / 0.664
2qtr NXXProbable nicotinate-nucleotide adenylyltransferase / 0.663
3kt3 TYMTryptophan--tRNA ligase, cytoplasmic 6.1.1.2 0.662
1k4m NADNicotinate-nucleotide adenylyltransferase 2.7.7.18 0.661
2rd2 QSIGlutamine--tRNA ligase 6.1.1.18 0.661
2xsz ATPRuvB-like 2 3.6.4.12 0.657
1b16 NAQAlcohol dehydrogenase 1.1.1.1 0.656
3akz GSUGlutamate--tRNA ligase 2 / 0.655
4wso NADProbable nicotinate-nucleotide adenylyltransferase / 0.655
1wyg FADXanthine dehydrogenase/oxidase / 0.653
4jxx ATPGlutamine--tRNA ligase 6.1.1.18 0.650