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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1xiu REA Retinoic acid receptor RXR

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1xiu REARetinoic acid receptor RXR / 1.268
1fby REARetinoic acid receptor RXR-alpha / 0.927
3fal REARetinoic acid receptor RXR-alpha / 0.856
3fc6 REARetinoic acid receptor RXR-alpha / 0.792
1fm6 9CRRetinoic acid receptor RXR-alpha / 0.783
4m8h R4MRetinoic acid receptor RXR-alpha / 0.766
3uvv REARetinoic acid receptor RXR-alpha / 0.741
2acl REARetinoic acid receptor RXR-alpha / 0.717
1fm9 9CRRetinoic acid receptor RXR-alpha / 0.711
1xls REARetinoic acid receptor RXR-alpha / 0.704
4m8e 29VRetinoic acid receptor RXR-alpha / 0.691
4k4j 1O8Retinoic acid receptor RXR-alpha / 0.675
2lbd REARetinoic acid receptor gamma / 0.659