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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1xh8 R55 cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1xh8 R55cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 1.397
1xh9 R69cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 1.108
1xh4 R69cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 1.106
1xh6 R94cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 1.087
1xh7 R96cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 1.069
1svg I04cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.993
1svh I08cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.979
1xha R68cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.961
1sve I01cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.928
1xh5 R68cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.917
1veb I05cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.790
1ydt IQBcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.714
2vo0 M03cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.679
1rek B8LcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.669
3vqh IQBcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.665
1q8t Y27cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.663