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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1xg5 NAP Dehydrogenase/reductase SDR family member 11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 1.434
4j7x NAPSepiapterin reductase 1.1.1.153 1.071
1oaa NAPSepiapterin reductase 1.1.1.153 1.040
3l77 NJPShort-chain alcohol dehydrogenase / 1.039
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 1.014
4hwk NAPSepiapterin reductase 1.1.1.153 1.004
4j7u NAPSepiapterin reductase 1.1.1.153 0.975
3tn7 NJPShort-chain alcohol dehydrogenase / 0.952
3p19 NDPPutative blue fluorescent protein / 0.950
4bmv NAPShort-chain dehydrogenase / 0.938
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.932
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.909
2jah NDPClavaldehyde dehydrogenase / 0.888
3tsc NADUncharacterized protein / 0.886
4b79 NADProbable short-chain dehydrogenase / 0.885
2ztm NADD(-)-3-hydroxybutyrate dehydrogenase / 0.884
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.880
2c29 NAPDihydroflavonol 4-reductase / 0.878
3o26 NDPSalutaridine reductase / 0.865
2yut NAPPutative short-chain oxidoreductase / 0.859
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.851
2wsb NADGalactitol dehydrogenase / 0.845
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.841
4yag NAIC alpha-dehydrogenase / 0.836
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.835
3sx2 NADUncharacterized protein / 0.835
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.825
3gy0 NAPNAD(P)-dependent oxidoreductase / 0.823
1xkq NDPUncharacterized protein / 0.819
3vdq NAD3-hydroxybutyrate dehydrogenase / 0.819
3sju NDPKeto reductase / 0.817
4fn4 NADShort chain dehydrogenase / 0.816
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.813
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.812
1x7h NDPPutative ketoacyl reductase 1.3.1 0.810
1vl8 NAPOxidoreductase, short chain dehydrogenase/reductase family / 0.808
2ekp NAD2-deoxy-D-gluconate 3-dehydrogenase / 0.808
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.806
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.805
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.805
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.802
1ae1 NAPTropinone reductase 1 / 0.798
1bdb NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase / 0.798
2bd0 NAPSepiapterin reductase / 0.798
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.798
1ipe NDPTropinone reductase 2 1.1.1.236 0.794
3s55 NADPutative short-chain dehydrogenase/reductase / 0.793
1xse NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.791
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.791
4dbz NDPPutative ketoacyl reductase 1.3.1 0.790
1nfr NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.788
4kwh NAPReductase homolog / 0.788
5jla NADPutative short-chain dehydrogenase/reductase / 0.788
5b1y NDP3-oxoacyl-[acyl-carrier-protein] reductase / 0.787
4yai NAIC alpha-dehydrogenase / 0.786
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.784
1sny NAPLD36273p / 0.784
4gh5 NADShort-chain dehydrogenase/reductase SDR / 0.784
3o4r NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.781
1x7g NAPPutative ketoacyl reductase 1.3.1 0.779
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.779
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.777
1pr9 NAPL-xylulose reductase 1.1.1.10 0.776
3d3w NAPL-xylulose reductase 1.1.1.10 0.776
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.775
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.773
3g49 NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.770
2dte NAIGlucose 1-dehydrogenase related protein / 0.768
4pvd NDPNADPH-dependent methylglyoxal reductase GRE2 / 0.768
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.768
1e6w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.766
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.765
3ai3 NDPNADPH-sorbose reductase / 0.765
4tqg NDPPutative dTDP-d-glucose 4 6-dehydratase / 0.765
2rbe NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.764
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.762
4o1m NADEnoyl-acyl carrier reductase / 0.762
1nff NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.761
1w4z NAPPutative ketoacyl reductase 1.3.1 0.761
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.760
4iqg NAPShort-chain dehydrogenase/reductase SDR / 0.759
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.757
3uce NDPDehydrogenase / 0.757
3geg NADShort-chain dehydrogenase/reductase SDR / 0.756
2q2q NADBeta-D-hydroxybutyrate dehydrogenase / 0.751
3baz NAPHydroxyphenylpyruvate reductase 1.1.1.237 0.751
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.749
2c59 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.747
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.747
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.746
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.744
2wdz NADGalactitol dehydrogenase / 0.743
2ztu NADD(-)-3-hydroxybutyrate dehydrogenase / 0.743
4imp NDPPolyketide synthase extender modules 3-4 / 0.742
1fdu NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.741
3ijr NADOxidoreductase, short chain dehydrogenase/reductase family / 0.739
2y99 NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase 1.3.1.56 0.735
3ai2 NDPNADPH-sorbose reductase / 0.733
3o03 NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase) / 0.733
1geg NADDiacetyl reductase [(S)-acetoin forming] 1.1.1.304 0.731
5aq1 NDPGlucose-6-phosphate 1-dehydrogenase / 0.729
3r3s NADPutative oxidoreductase / 0.726
3tox NAPPutative oxidoreductase / 0.726
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.725
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.724
1w8d NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.723
3mje NDPAmphB / 0.723
4b8z NAPGDP-L-fucose synthase 1.1.1.271 0.722
1ek5 NADUDP-glucose 4-epimerase / 0.717
1nai NADUDP-glucose 4-epimerase 5.1.3.2 0.717
4dmm NAP3-oxoacyl-[acyl-carrier-protein] reductase / 0.717
5cpb NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.717
3f1k NAPUncharacterized oxidoreductase YciK 1 0.715
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.714
2yy7 NADL-threonine dehydrogenase / 0.713
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.712
4qec NAPElxO / 0.711
5jyd NADShort chain dehydrogenase / 0.711
1eny NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.710
2ggs NDPdTDP-4-dehydrorhamnose reductase / 0.710
4b4o NDPEpimerase family protein SDR39U1 / 0.710
1vrw NAIEnoyl-ACP reductase / 0.709
3wds NADNADH-dependent quinuclidinone reductase / 0.709
4o0l NDPNADPH-dependent 3-quinuclidinone reductase / 0.709
2b37 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.708
3uxy NADShort-chain dehydrogenase/reductase SDR / 0.708
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.706
4fj2 NAP17beta-hydroxysteroid dehydrogenase / 0.705
2aq8 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.704
3ehe NADUDP-glucose 4-epimerase (GalE-1) / 0.704
4m87 NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.704
2bfo NDPPteridine reductase 1 1.5.1.33 0.703
4hxy NDPPlm1 / 0.703
4qed NAPElxO / 0.703
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.702
3pvz NADUDP-N-acetylglucosamine 4,6-dehydratase / 0.702
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.701
4i5e NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.701
1g6k NADGlucose 1-dehydrogenase 1.1.1.47 0.700
2aqh NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.700
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.700
4dqu NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.700
4fj1 NAP17beta-hydroxysteroid dehydrogenase / 0.698
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.698
1gco NADGlucose 1-dehydrogenase 1.1.1.47 0.697
2v6g NAP3-oxo-Delta(4,5)-steroid 5-beta-reductase / 0.697
3uic NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.697
2wyv NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.696
4e5y NDPGDP-L-fucose synthase 1.1.1.271 0.695
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.694
4b8w NAPGDP-L-fucose synthase 1.1.1.271 0.694
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 0.692
1sby NADAlcohol dehydrogenase 1.1.1.1 0.690
3of2 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.690
5lc1 NADL-threonine 3-dehydrogenase / 0.690
3ak4 NADNADH-dependent quinuclidinone reductase / 0.689
1i2b NADUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.686
1rkx NADCDP-D-glucose-4,6-dehydratase / 0.686
1zem NADXylitol dehydrogenase / 0.686
2b4q NAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.685
5jy1 NADPutative short-chain dehydrogenase/reductase / 0.685
1u7t NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.684
3oey NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.683
2aqk NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.682
2h9i EADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.682
2b35 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.681
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.681
1rpn NDPGDP-mannose 4,6-dehydratase / 0.680
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.680
2pzj NADPutative nucleotide sugar epimerase/ dehydratase / 0.679
1eq2 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.678
1n7g NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.678
1nah NADUDP-glucose 4-epimerase 5.1.3.2 0.678
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.678
2idz ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.678
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.678
2yjz NAPMetalloreductase STEAP4 1.16.1 0.678
3pef NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.678
3a9w NADNDP-sugar epimerase / 0.677
4egb NADdTDP-glucose 4,6-dehydratase / 0.677
4u7w NDPMxaA / 0.677
1n7h NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.676
4oxy NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.676
4trn NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.676
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.674
3a4v NADNDP-sugar epimerase / 0.674
5koi NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.674
1qyv NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.671
1w73 NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.671
3h4v NAPPteridine reductase 1 1.5.1.33 0.670
3qrw NDPPutative ketoacyl reductase 1.3.1 0.669
3ru7 NADUDP-N-acetylglucosamine 4-epimerase / 0.669
4bgi NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.669
4bv9 NDPKetimine reductase mu-crystallin 1.5.1.25 0.669
4eue NAITrans-2-enoyl-CoA reductase [NADH] / 0.669
2hrb NAPCarbonyl reductase [NADPH] 3 1.1.1.184 0.667
3oew NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.666
3a14 NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.664
3ajr NADNDP-sugar epimerase / 0.663
3au8 NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic 1.1.1.267 0.663
3ruh NADUDP-N-acetylglucosamine 4-epimerase / 0.663
1n2s NAIdTDP-4-dehydrorhamnose reductase 1.1.1.133 0.661
3a1n NADNDP-sugar epimerase / 0.661
3ru9 NADUDP-N-acetylglucosamine 4-epimerase / 0.661
1bsv NDPGDP-L-fucose synthase / 0.660
1bxk NADdTDP-glucose 4,6-dehydratase 2 / 0.660
3rud NADUDP-N-acetylglucosamine 4-epimerase / 0.660
4bkq NAIEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.660
4bqp NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.660
4dti NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.660
4zju NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.660
2aqi NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.658
2gn8 NAPUDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.658
2ieb ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.658
3qwf NAP17beta-hydroxysteroid dehydrogenase / 0.658
4bii NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.658
5a03 NDPGlucose-fructose oxidoreductase / 0.656
1b15 NAEAlcohol dehydrogenase 1.1.1.1 0.655
1h6c NDPGlucose--fructose oxidoreductase 1.1.99.28 0.655
2c54 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.655
2p5u NADUDP-glucose 4-epimerase / 0.655
4eso NAPPutative oxidoreductase / 0.655
1wvg APRCDP-glucose 4,6-dehydratase 4.2.1.45 0.654
5a05 NDPGlucose-fructose oxidoreductase / 0.654
3bmo NAPPteridine reductase / 0.653
1enz NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.652
2pk3 A2RGDP-6-deoxy-D-mannose reductase / 0.652
3o9z NADLipopolysaccaride biosynthesis protein wbpB / 0.652
1mg5 NAIAlcohol dehydrogenase 1.1.1.1 0.651
1pt9 TAPNAD(P) transhydrogenase, mitochondrial 1.6.1.2 0.651
3rj9 NADAlcohol dehydrogenase 1.1.1.1 0.651
1dgf NDPCatalase 1.11.1.6 0.650
4j1t NAPNAD(P) transhydrogenase subunit beta / 0.650
5d2e NAPMlnE / 0.650
5ein NAP[LysW]-L-2-aminoadipate 6-phosphate reductase / 0.650