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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1xdq MTE Protein-methionine-sulfoxide reductase catalytic subunit MsrP

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1xdq MTEProtein-methionine-sulfoxide reductase catalytic subunit MsrP / 1.031
1xdy MTEProtein-methionine-sulfoxide reductase catalytic subunit MsrP / 0.945
3rzp PRFNADPH-dependent 7-cyano-7-deazaguanine reductase / 0.664
4dsj DGTDNA polymerase I / 0.652
1fnd A2PFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.651
4d9f DCSD-cysteine desulfhydrase / 0.651