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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1x7b 041 Estrogen receptor beta

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1x7b 041Estrogen receptor beta / 1.021
1x76 697Estrogen receptor beta / 0.888
1u9e 397Estrogen receptor beta / 0.852
1zaf 789Estrogen receptor beta / 0.805
1x78 244Estrogen receptor beta / 0.789
1yye 196Estrogen receptor beta / 0.782
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2nv7 555Estrogen receptor beta / 0.724
1u3r 338Estrogen receptor beta / 0.695
1x7r GENEstrogen receptor / 0.695
4zn7 DESEstrogen receptor / 0.690
4iw6 1GUEstrogen receptor / 0.686
4iu7 1GMEstrogen receptor / 0.685
1gwq ZTWEstrogen receptor / 0.669
1x7e 244Estrogen receptor / 0.667
2j7x ESTEstrogen receptor beta / 0.663
4e5f 0N7Polymerase acidic protein / 0.660
3v4a PK1Androgen receptor / 0.653
3pcf FHBProtocatechuate 3,4-dioxygenase beta chain 1.13.11.3 0.650