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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1x78 244 Estrogen receptor beta

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1x78 244Estrogen receptor beta / 0.986
1u9e 397Estrogen receptor beta / 0.837
1zaf 789Estrogen receptor beta / 0.794
1x7b 041Estrogen receptor beta / 0.789
1x76 697Estrogen receptor beta / 0.781
1x7e 244Estrogen receptor / 0.773
4pp6 STLEstrogen receptor / 0.748
1yye 196Estrogen receptor beta / 0.738
1gwq ZTWEstrogen receptor / 0.692
1gwr ESTEstrogen receptor / 0.686
1x7r GENEstrogen receptor / 0.684
1qkm GENEstrogen receptor beta / 0.681
1yy4 4NAEstrogen receptor beta / 0.680
5dxg ESTEstrogen receptor / 0.677
1zky 689Estrogen receptor / 0.673
4e5f 0N7Polymerase acidic protein / 0.660
1tz8 DESTransthyretin / 0.650
4e5l DBHPolymerase acidic protein / 0.650