sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1x1b | SAH | C-20 methyltransferase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1x1b | SAH | C-20 methyltransferase | / | 0.994 | |
| 1x1c | SAH | C-20 methyltransferase | / | 0.946 | |
| 1x1a | SAM | C-20 methyltransferase | / | 0.936 | |
| 1x1d | SAH | C-20 methyltransferase | / | 0.886 | |
| 2v74 | SAH | Histone-arginine methyltransferase CARM1 | / | 0.723 | |
| 1kia | SAM | Glycine N-methyltransferase | 2.1.1.20 | 0.699 | |
| 1qaq | SFG | rRNA adenine N-6-methyltransferase | 2.1.1.184 | 0.683 | |
| 5je3 | SAH | Methyl transferase | / | 0.681 | |
| 2yqz | SAM | Uncharacterized protein | / | 0.672 | |
| 1f3l | SAH | Protein arginine N-methyltransferase 3 | / | 0.669 | |
| 3hf8 | ML0 | Tryptophan 5-hydroxylase 1 | 1.14.16.4 | 0.669 | |
| 3kpj | SAH | Phenylethanolamine N-methyltransferase | 2.1.1.28 | 0.669 | |
| 4gqb | 0XU | Protein arginine N-methyltransferase 5 | / | 0.667 | |
| 1ri3 | SAH | mRNA cap guanine-N7 methyltransferase | 2.1.1.56 | 0.666 | |
| 1sdw | IYT | Peptidyl-glycine alpha-amidating monooxygenase | 1.14.17.3 | 0.658 | |
| 1nbh | SAM | Glycine N-methyltransferase | 2.1.1.20 | 0.657 | |
| 5dwq | SFG | Histone-arginine methyltransferase CARM1 | / | 0.657 | |
| 1sqf | SAM | Ribosomal RNA small subunit methyltransferase B | 2.1.1.176 | 0.656 | |
| 3fri | SAH | 16S rRNA methylase | / | 0.656 | |
| 3ou2 | SAH | SAM-dependent methyltransferase | / | 0.654 | |
| 5dx8 | SFG | Histone-arginine methyltransferase CARM1 | / | 0.654 | |
| 5je2 | SAH | Methyl transferase | / | 0.654 | |
| 1jmg | UMP | Thymidylate synthase | / | 0.653 | |
| 2g8a | UMP | Thymidylate synthase | / | 0.652 | |
| 1qao | SAM | rRNA adenine N-6-methyltransferase | 2.1.1.184 | 0.651 | |
| 4hh4 | SAH | CcbJ | / | 0.651 | |
| 4x3q | SAH | SibL | / | 0.651 | |
| 5icf | SAH | (S)-norcoclaurine 6-O-methyltransferase | / | 0.651 | |
| 1bc5 | SAH | Chemotaxis protein methyltransferase | 2.1.1.80 | 0.650 | |
| 3ar4 | ATP | Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 | 3.6.3.8 | 0.650 | |
| 4qnu | GEK | tRNA U34 carboxymethyltransferase | / | 0.650 |