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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1x15 NAD NAD(P) transhydrogenase subunit alpha 1.6.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1x15 NADNAD(P) transhydrogenase subunit alpha 1.6.1.2 0.882
1x14 NADNAD(P) transhydrogenase subunit alpha 1.6.1.2 0.817
1u28 NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.724
1u2g APRNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.719
1f8g NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.709
2oo5 TXDNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.708
2oor NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.701
1u2d NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.700
2fsv NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.698
4yr9 NADL-threonine 3-dehydrogenase, mitochondrial 1.1.1.103 0.692
1l7e NAINAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.689
1ptj SNDNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.678
5ccx SAHtRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A 2.1.1.220 0.663
5ccb SAHtRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A 2.1.1.220 0.659
3qvw NADMyo-inositol-1-phosphate synthase (Ino1) / 0.655
4e2x SAHMethyltransferase / 0.655
1la2 NADInositol-3-phosphate synthase 5.5.1.4 0.654
3qvt NAIMyo-inositol-1-phosphate synthase (Ino1) / 0.653
4yv2 S4MSpermidine synthase, putative / 0.653