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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1x14 NAD NAD(P) transhydrogenase subunit alpha 1.6.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1x14 NADNAD(P) transhydrogenase subunit alpha 1.6.1.2 0.920
1x15 NADNAD(P) transhydrogenase subunit alpha 1.6.1.2 0.817
1f8g NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.697
2fsv NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.687
1u28 NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.685
1u2g APRNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.660
2oor NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.660
1la2 NADInositol-3-phosphate synthase 5.5.1.4 0.659
3wv7 ADPHmd co-occurring protein HcgE / 0.655