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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1wwz ACO Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1wwz ACOUncharacterized protein / 1.308
2cnt COARibosomal-protein-alanine acetyltransferase / 0.901
5kgj ACOPredicted acetyltransferase / 0.873
5kf8 ACOPredicted acetyltransferase / 0.871
5kgp ACOPredicted acetyltransferase / 0.868
5kf9 ACOPredicted acetyltransferase / 0.867
5kf2 ACOPredicted acetyltransferase / 0.860
5kf1 ACOPredicted acetyltransferase / 0.857
4kvx ACON-terminal acetyltransferase A complex catalytic subunit ard1 2.3.1.88 0.851
5kgh ACOPredicted acetyltransferase / 0.840
1j4j ACOAcetyltransferase 2.3.1 0.823
4hkf ACOAlpha-tubulin N-acetyltransferase 1 / 0.815
5h84 1VUHistone acetyltransferase KAT2A 2.3.1.48 0.812
2x7b COAN-alpha-acetyltransferase 2.3.1 0.809
1z4r ACOHistone acetyltransferase KAT2A 2.3.1.48 0.807
3fbu COAAcetyltransferase, GNAT family / 0.804
3pgp ACOUncharacterized protein / 0.804
4lx9 ACON-alpha-acetyltransferase 2.3.1 0.804
1tiq COASpermidine/spermine N(1)-acetyltransferase / 0.798
3to6 LYS_CMCHistone acetyltransferase ESA1 / 0.798
4r3k COAN-alpha-acetyltransferase 2.3.1 0.797
2cns ACORibosomal-protein-alanine acetyltransferase / 0.796
3vwe COAAlpha-tubulin N-acetyltransferase 1 / 0.795
1p0h ACOMycothiol acetyltransferase 2.3.1.189 0.794
2r8v ACOAmino-acid acetyltransferase / 0.790
2fxf ACODiamine acetyltransferase 1 / 0.787
1p0h COAMycothiol acetyltransferase 2.3.1.189 0.784
3te4 ACODopamine N-acetyltransferase / 0.778
1ozp ACOMycothiol acetyltransferase 2.3.1.189 0.776
1qsn COAHAT A1 / 0.775
3exn ACOProbable acetyltransferase / 0.766
5kf2 COAPredicted acetyltransferase / 0.766
4zm6 ACON-acetyl-beta-D glucosaminidase / 0.765
1mjb ACOHistone acetyltransferase ESA1 / 0.759
2bsw CAOProbable acetyltransferase / 0.753
4u9v ACON-alpha-acetyltransferase 40 2.3.1 0.753
2giv ACOHistone acetyltransferase KAT8 / 0.752
1mj9 COAHistone acetyltransferase ESA1 / 0.751
1kuv CA5Serotonin N-acetyltransferase / 0.747
1b87 ACOAac(6')-Ii protein / 0.744
1s5k COAAminoglycoside N(6')-acetyltransferase type 1 / 0.743
1qsr ACOHAT A1 / 0.742
1i12 ACOGlucosamine 6-phosphate N-acetyltransferase / 0.738
2fiw ACOGCN5-related N-acetyltransferase:Aminotransferase, class-II / 0.738
2bei ACODiamine acetyltransferase 2 2.3.1.57 0.737
2cy2 ACOProbable acetyltransferase / 0.737
3r1k COAN-acetyltransferase Eis / 0.737
1kuy COTSerotonin N-acetyltransferase / 0.734
4jwp ACOGCN5-related N-acetyltransferase / 0.734
4ag7 COAGlucosamine 6-phosphate N-acetyltransferase / 0.733
4gs4 ACOAlpha-tubulin N-acetyltransferase 1 / 0.733
4xnh ACON-terminal acetyltransferase A complex subunit NAT5 2.3.1 0.733
2jev NHQDiamine acetyltransferase 1 / 0.732
1s3z COAAminoglycoside N(6')-acetyltransferase type 1 / 0.731
2b58 COADiamine acetyltransferase 1 / 0.731
1fy7 COAHistone acetyltransferase ESA1 / 0.730
1n71 COAAac(6')-Ii protein / 0.728
1pu9 COAHAT A1 / 0.728
2psw COAN-alpha-acetyltransferase 50 / 0.725
2jdc CAOProbable acetyltransferase / 0.724
1ib1 COTSerotonin N-acetyltransferase / 0.723
4mxe ACON-acetyltransferase ESCO1 2.3.1 0.722
1l0c COTSerotonin N-acetyltransferase / 0.721
1mja COAHistone acetyltransferase ESA1 / 0.720
5kf8 COAPredicted acetyltransferase / 0.720
1s7n COAAcetyl transferase / 0.719
5h86 BCOHistone acetyltransferase KAT2A 2.3.1.48 0.719
3f0a ACOSpermidine N(1)-acetyltransferase / 0.718
1pua COAHAT A1 / 0.717
2zpa ACOtRNA(Met) cytidine acetyltransferase TmcA / 0.715
3k9u ACOSpermidine N(1)-acetyltransferase / 0.714
4kub COAUncharacterized protein / 0.714
3cz7 ACOHistone acetyltransferase RTT109 2.3.1.48 0.713
3d2m COAAmino-acid acetyltransferase / 0.713
4psw COAHistone acetyltransferase type B catalytic subunit / 0.710
4r87 COASpermidine N(1)-acetyltransferase / 0.709
2c27 ACOMycothiol acetyltransferase 2.3.1.189 0.708
3r95 ACOMccE protein / 0.708
4qvt ACOAcetyltransferase YpeA 2.3.1 0.704
4ri1 ACOUDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase 2.3.1.202 0.704
4crz ACOPanD regulatory factor / 0.702
5kf9 COAPredicted acetyltransferase / 0.701
3tfy COAN-alpha-acetyltransferase 50 2.3.1 0.699
1m1d LYXHAT A1 / 0.698
2vez ACOGlucosamine 6-phosphate acetyltransferase, putative / 0.698
2ft0 ACOdTDP-fucosamine acetyltransferase / 0.695
2q4v ACODiamine acetyltransferase 2 2.3.1.57 0.694
5kf1 COAPredicted acetyltransferase / 0.692
1ghe ACOAcetyltransferase 2.3.1 0.690
2b3v ACODiamine acetyltransferase 1 / 0.686
1v0c ACOAAC(6')-Ib / 0.685
2zfn ACOHistone acetyltransferase RTT109 2.3.1.48 0.684
2jdd ACOProbable acetyltransferase / 0.683
2vxk COAGlucosamine 6-phosphate acetyltransferase, putative / 0.682
2ob0 ACON-alpha-acetyltransferase 50 / 0.681
2vzz SCAPutative succinyl-CoA transferase Rv0802c 2.8.3 0.681
3q33 ACOHistone acetyltransferase RTT109 2.3.1.48 0.678
1bob ACOHistone acetyltransferase type B catalytic subunit / 0.668
2ou2 ACOHistone acetyltransferase KAT5 / 0.668
2ge3 ACOProbable acetyltransferase / 0.667
2a4n COAAac(6')-Ii protein / 0.666
3r96 ACOMccE protein / 0.666
3sxn COAN-acetyltransferase Eis / 0.664
2ozu ACOHistone acetyltransferase KAT6A / 0.662
2vqy ACOAAC(6')-Ib / 0.661
1kux CA3Serotonin N-acetyltransferase / 0.660
2o28 COAGlucosamine 6-phosphate N-acetyltransferase / 0.660
2wpw ACOOrf14 / 0.660
4u9z COAAlpha-tubulin N-acetyltransferase 1 / 0.660
1qsm ACOHistone acetyltransferase HPA2 / 0.658
4kvm SER_ALA_SER_GLU_1XEN-terminal acetyltransferase A complex catalytic subunit ard1 2.3.1.88 0.658
1xvt COAL-carnitine CoA-transferase / 0.657
3ryo ACON-acetyltransferase Eis / 0.655
1xvv CCQL-carnitine CoA-transferase / 0.652
2rc4 ACOHistone acetyltransferase KAT6A / 0.652