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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1wvg CXY CDP-glucose 4,6-dehydratase 4.2.1.45

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1wvg CXYCDP-glucose 4,6-dehydratase 4.2.1.45 1.312
2pk3 GDDGDP-6-deoxy-D-mannose reductase / 0.764
2gn4 UD1UDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.740
1sb8 UD2WbpP / 0.738
3enk UPGUDP-glucose 4-epimerase / 0.710
1t2a GDPGDP-mannose 4,6 dehydratase 4.2.1.47 0.705
4lis UPGUDP-glucose 4-epimerase (Eurofung) / 0.695
1kvu UPGUDP-glucose 4-epimerase 5.1.3.2 0.691
2gn9 UPGUDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.689
1n7h GDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.687
1ek6 UPGUDP-glucose 4-epimerase / 0.683
1uda UFGUDP-glucose 4-epimerase 5.1.3.2 0.673
1i3k UPGUDP-glucose 4-epimerase / 0.672
4xsv C5PEthanolamine-phosphate cytidylyltransferase 2.7.7.14 0.671
1udb UFGUDP-glucose 4-epimerase 5.1.3.2 0.669
1qrr UPGUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.667
1hzj UD1UDP-glucose 4-epimerase / 0.666
2z1m GDPGDP-mannose 4,6-dehydratase / 0.665
1i24 UPGUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.658
1a9y UPGUDP-glucose 4-epimerase 5.1.3.2 0.657
3ruh UD6UDP-N-acetylglucosamine 4-epimerase / 0.655
2gn6 UD1UDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.653