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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1wng SAH Diphthine synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1wng SAHDiphthine synthase / 1.102
2egs SAHDiphthine synthase / 1.095
2dv3 SAHDiphthine synthase / 1.092
2dv5 SAHDiphthine synthase / 1.089
2huv SAHDiphthine synthase / 1.081
2owv SAHDiphthine synthase / 1.077
2dxv SAHDiphthine synthase / 1.076
2ed5 SAHDiphthine synthase / 1.075
1vce SAHDiphthine synthase / 1.074
2e08 SAHDiphthine synthase / 1.074
2eh4 SAHDiphthine synthase / 1.074
2ek2 SAHDiphthine synthase / 1.074
2el0 SAHDiphthine synthase / 1.074
2en5 SAHDiphthine synthase / 1.074
2pca SAHDiphthine synthase / 1.074
2dsh SAHDiphthine synthase / 1.073
2dsi SAHDiphthine synthase / 1.073
2e8s SAHDiphthine synthase / 1.073
2ek4 SAHDiphthine synthase / 1.073
2eld SAHDiphthine synthase / 1.073
2emr SAHDiphthine synthase / 1.073
2pb5 SAHDiphthine synthase / 1.073
2pcg SAHDiphthine synthase / 1.073
2eh5 SAHDiphthine synthase / 1.072
2eka SAHDiphthine synthase / 1.072
2p5f SAHDiphthine synthase / 1.072
2e16 SAHDiphthine synthase / 1.071
2e8r SAHDiphthine synthase / 1.071
2el3 SAHDiphthine synthase / 1.071
2p2x SAHDiphthine synthase / 1.071
2eeq SAHDiphthine synthase / 1.070
2pb6 SAHDiphthine synthase / 1.070
2ejk SAHDiphthine synthase / 1.068
2p6d SAHDiphthine synthase / 1.065
2hut SAHDiphthine synthase / 1.062
2dek SAHDiphthine synthase / 1.058
2e17 SAHDiphthine synthase / 1.058
2e8h SAHDiphthine synthase / 1.058
2egb SAHDiphthine synthase / 1.058
2huq SAHDiphthine synthase / 1.058
2e07 SAHDiphthine synthase / 1.057
2e7r SAHDiphthine synthase / 1.057
2owg SAHDiphthine synthase / 1.057
2owu SAHDiphthine synthase / 1.057
2dxw SAHDiphthine synthase / 1.056
2dxx SAHDiphthine synthase / 1.056
2egl SAHDiphthine synthase / 1.056
2ehl SAHDiphthine synthase / 1.056
2owk SAHDiphthine synthase / 1.056
2p6i SAHDiphthine synthase / 1.056
2pch SAHDiphthine synthase / 1.056
2z6r SAHDiphthine synthase / 1.056
2dsg SAHDiphthine synthase / 1.055
2e4n SAHDiphthine synthase / 1.055
2e15 SAHDiphthine synthase / 1.054
2ek7 SAHDiphthine synthase / 1.054
2p9d SAHDiphthine synthase / 1.054
2pcm SAHDiphthine synthase / 1.053
2p6k SAHDiphthine synthase / 1.052
2p6l SAHDiphthine synthase / 1.052
2pck SAHDiphthine synthase / 1.051
2p5c SAHDiphthine synthase / 1.048
2ejj SAHDiphthine synthase / 1.044
2dv7 SAHDiphthine synthase / 1.043
2eh2 SAHDiphthine synthase / 1.041
2e8q SAHDiphthine synthase / 1.039
2ele SAHDiphthine synthase / 1.038
2dv4 SAHDiphthine synthase / 1.036
2emu SAHDiphthine synthase / 1.032
2ek3 SAHDiphthine synthase / 1.020
2pb4 SAHDiphthine synthase / 1.017
2pci SAHDiphthine synthase / 0.990
2eni SAHDiphthine synthase / 0.989
2hux SAHDiphthine synthase / 0.981
2hr8 SAHDiphthine synthase / 0.906
2owf SAHDiphthine synthase / 0.785
2ejz SAHDiphthine synthase / 0.744
2e0n SAHPrecorrin-2 C20-methyltransferase / 0.718
2ed3 SAHDiphthine synthase / 0.717
3ndc SAHPrecorrin-4 C(11)-methyltransferase 2.1.1.133 0.704
2ha8 SAHProbable methyltransferase TARBP1 / 0.688
3nut SAHPrecorrin-3 methylase / 0.684
4x3l MTARNA 2'-O ribose methyltransferase / 0.682
3s3t ATPUniversal stress protein / 0.677
2hma SAMtRNA-specific 2-thiouridylase MnmA / 0.675
2qbu SAHPrecorrin-2 methyltransferase / 0.673
1j21 ATPArgininosuccinate synthase / 0.670
5a7y SAHtRNA (adenine(9)-N1)-methyltransferase 2.1.1.218 0.670
1kor ANPArgininosuccinate synthase / 0.658
4rr7 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.651