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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1wkg POI [LysW]-aminoadipate semialdehyde transaminase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1wkg POI[LysW]-aminoadipate semialdehyde transaminase / 1.192
2oat PFMOrnithine aminotransferase, mitochondrial 2.6.1.13 0.782
4jey PLPAcetylornithine/succinyldiaminopimelate aminotransferase 2.6.1.11 0.762
4zwm PLPOrnithine aminotransferase, mitochondrial, putative / 0.744
4aoa IK2Beta-phenylalanine transaminase 2.6.1 0.720
2hp2 KE4Glutamate-1-semialdehyde 2,1-aminomutase 5.4.3.8 0.719
3tfu PL8Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 2.6.1.62 0.711
3zc3 NAPFerredoxin--NADP reductase 1.18.1.2 0.670
4wxg 2BOSerine hydroxymethyltransferase / 0.663
5ccc DDFDihydrofolate reductase 1.5.1.3 0.660