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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1wbv LI3 Mitogen-activated protein kinase 14

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1wbv LI3Mitogen-activated protein kinase 14 / 1.057
1wbt WBTMitogen-activated protein kinase 14 / 0.922
1wbs LI2Mitogen-activated protein kinase 14 / 0.918
3d83 GK6Mitogen-activated protein kinase 14 / 0.852
4aa0 AA0Mitogen-activated protein kinase 14 / 0.834
3kq7 KQ7Mitogen-activated protein kinase 14 / 0.825
2bak AQZMitogen-activated protein kinase 14 / 0.799
4a9y AQZMitogen-activated protein kinase 14 / 0.799
1w83 L11Mitogen-activated protein kinase 14 / 0.783
3bv2 P38Mitogen-activated protein kinase 14 / 0.767
1kv1 BMUMitogen-activated protein kinase 14 / 0.742
3bv3 P39Mitogen-activated protein kinase 14 / 0.715
3nnx EDDMitogen-activated protein kinase 14 / 0.710
3e93 19BMitogen-activated protein kinase 14 / 0.705
3p79 P79Mitogen-activated protein kinase 14 / 0.702
3p7a P7AMitogen-activated protein kinase 14 / 0.699
2puc GUNHTH-type transcriptional repressor PurR / 0.695
3hv5 R24Mitogen-activated protein kinase 14 / 0.691
5hid B1ESerine/threonine-protein kinase B-raf 2.7.11.1 0.691
3gcu R48Mitogen-activated protein kinase 14 / 0.690
2e2b 406Tyrosine-protein kinase ABL1 2.7.10.2 0.680
3oc1 BMUMitogen-activated protein kinase 14 / 0.680
1wet GUNHTH-type transcriptional repressor PurR / 0.679
3p7c P7CMitogen-activated protein kinase 14 / 0.679
3o8u BMUMitogen-activated protein kinase 14 / 0.676
3npc B96Mitogen-activated protein kinase 9 2.7.11.24 0.673
3o8t BMUMitogen-activated protein kinase 14 / 0.672
3gi3 B10Mitogen-activated protein kinase 14 / 0.667
3uvr 06FMitogen-activated protein kinase 14 / 0.664
3gcs BAXMitogen-activated protein kinase 14 / 0.661
3hv7 1AUMitogen-activated protein kinase 14 / 0.661
4e5f 0N7Polymerase acidic protein / 0.660
2zb0 GK3Mitogen-activated protein kinase 14 / 0.659
3p5k P5KMitogen-activated protein kinase 14 / 0.656
3k3j F4CMitogen-activated protein kinase 14 / 0.655
1w82 L10Mitogen-activated protein kinase 14 / 0.652
2puf GUNHTH-type transcriptional repressor PurR / 0.652
4fc0 0T2Serine/threonine-protein kinase B-raf 2.7.11.1 0.652
4ksp 1SUSerine/threonine-protein kinase B-raf 2.7.11.1 0.652