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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1wbp ADP SRSF protein kinase 1 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1wbp ADPSRSF protein kinase 1 2.7.11.1 0.821
3vjo ANPEpidermal growth factor receptor 2.7.10.1 0.677
3a7h ATPSerine/threonine-protein kinase 24 2.7.11.1 0.657
4otp ADPSerine/threonine-protein kinase RIO1 2.7.11.1 0.657
2itn ANPEpidermal growth factor receptor 2.7.10.1 0.655
3ung ADPCRISPR system Cmr subunit Cmr2 / 0.653
2acx ANPG protein-coupled receptor kinase 6 2.7.11.16 0.651
4iaz ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.650