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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1w87 FAD Ferredoxin--NADP reductase 1.18.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1w87 FADFerredoxin--NADP reductase 1.18.1.2 1.282
1w35 FADFerredoxin--NADP reductase 1.18.1.2 1.052
1gjr FADFerredoxin--NADP reductase 1.18.1.2 1.051
2vyq FADFerredoxin--NADP reductase 1.18.1.2 1.039
4c43 FADFerredoxin--NADP reductase 1.18.1.2 1.031
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 1.030
1w34 FADFerredoxin--NADP reductase 1.18.1.2 1.015
1ogj FADFerredoxin--NADP reductase 1.18.1.2 1.009
3vo2 FADFerredoxin--NADP reductase / 1.006
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 0.998
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.997
3zbt FADFerredoxin--NADP reductase 1.18.1.2 0.997
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.986
2b5o FADFerredoxin--NADP reductase 1.18.1.2 0.982
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.976
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.971
1que FADFerredoxin--NADP reductase 1.18.1.2 0.964
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.961
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.959
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.959
2rc6 FADFerredoxin--NADP reductase / 0.955
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.953
1e64 FADFerredoxin--NADP reductase 1.18.1.2 0.951
1qgz FADFerredoxin--NADP reductase 1.18.1.2 0.949
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.948
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.947
1b2r FADFerredoxin--NADP reductase 1.18.1.2 0.943
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.941
3w5u FADFerredoxin / 0.936
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.935
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.927
4bpr FADFerredoxin--NADP reductase 1.18.1.2 0.922
1e62 FADFerredoxin--NADP reductase 1.18.1.2 0.921
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.918
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.913
1gaw FADFerredoxin / 0.906
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.893
2rc5 FADFerredoxin--NADP reductase / 0.891
3qfs FADNADPH--cytochrome P450 reductase / 0.885
2bf4 FADNADPH--cytochrome P450 reductase / 0.881
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.879
1gaq FADFerredoxin / 0.875
4yaf FADNADPH--cytochrome P450 reductase / 0.870
1sm4 FADFerredoxin--NADP reductase / 0.865
3qfc FADNADPH--cytochrome P450 reductase / 0.862
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.857
1ja1 FADNADPH--cytochrome P450 reductase / 0.854
4y7c FADNADPH--cytochrome P450 reductase / 0.853
2eix FADNADH-cytochrome b5 reductase / 0.850
1ewy FADFerredoxin--NADP reductase 1.18.1.2 0.847
3qe2 FADNADPH--cytochrome P450 reductase / 0.846
1j9z FADNADPH--cytochrome P450 reductase / 0.841
4y9u FADNADPH--cytochrome P450 reductase / 0.836
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.830
3ojw FADNADPH--cytochrome P450 reductase / 0.822
3qft FADNADPH--cytochrome P450 reductase / 0.820
1ja0 FADNADPH--cytochrome P450 reductase / 0.814
4y9r FADNADPH--cytochrome P450 reductase / 0.814
3qfr FADNADPH--cytochrome P450 reductase / 0.811
1amo FADNADPH--cytochrome P450 reductase / 0.803
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.803
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.802
4yau FADNADPH--cytochrome P450 reductase / 0.802
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.795
2bpo FADNADPH--cytochrome P450 reductase / 0.795
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.792
2bn4 FADNADPH--cytochrome P450 reductase / 0.784
3ojx FADNADPH--cytochrome P450 reductase / 0.781
2qdx FADFerredoxin--NADP+ reductase / 0.774
3fpk FADFerredoxin-NADP reductase / 0.769
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.758
2pia FMNPhthalate dioxygenase reductase / 0.756
1cqx FADFlavohemoprotein / 0.751
4yao FADNADPH--cytochrome P450 reductase / 0.749
1tll FADNitric oxide synthase, brain 1.14.13.39 0.739
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.737
4b4d FADFerredoxin-NADP reductase / 0.732
3crz FADFerredoxin--NADP+ reductase / 0.730
2vnh FADNADPH:ferredoxin reductase / 0.726
2gpj FADSiderophore-interacting protein / 0.720
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.718
2bgj FADNADPH:ferredoxin reductase / 0.715
2hq9 FADMll6688 protein / 0.715
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.711
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.710
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.705
4fk8 FADFerredoxin--NADP reductase / 0.705
2vnk FADNADPH:ferredoxin reductase / 0.703
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.701
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.692
2bgi FADNADPH:ferredoxin reductase / 0.690
4k1x FADNADPH:ferredoxin reductase / 0.689
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.686
1gvh FADFlavohemoprotein / 0.678
2vnj FADNADPH:ferredoxin reductase / 0.676
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.676
1eje FMNProtein MTH_152 / 0.674
2iml FMNUncharacterized protein / 0.670
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.669
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.668
3e4v FMNUncharacterized protein / 0.666
4c2z MYAGlycylpeptide N-tetradecanoyltransferase 1 / 0.664
4ybn FADFlavin-nucleotide-binding protein / 0.662
3r5z F42Uncharacterized protein / 0.658
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.658
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.653
3mkh FADNitroalkane oxidase / 0.653