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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1vso AT1 Glutamate receptor ionotropic, kainate 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1vso AT1Glutamate receptor ionotropic, kainate 1 / 1.074
4dld TZGGlutamate receptor ionotropic, kainate 1 / 0.821
3s2v 3HUGlutamate receptor ionotropic, kainate 1 / 0.817
2qs1 UB1Glutamate receptor ionotropic, kainate 1 / 0.781
2qs4 LY5Glutamate receptor ionotropic, kainate 1 / 0.731
4h8i 11WGlutamate receptor ionotropic, kainate 2 / 0.726
2xxy KAIGlutamate receptor ionotropic, kainate 2 / 0.720
1fw0 KAIGlutamate receptor 2 / 0.712
2ojt UBAGlutamate receptor ionotropic, kainate 1 / 0.709
4bdo KAIGlutamate receptor ionotropic, kainate 2 / 0.703
2qs3 UBEGlutamate receptor ionotropic, kainate 1 / 0.701
3c34 KAIGlutamate receptor ionotropic, kainate 1 / 0.694
3c35 KAIGlutamate receptor ionotropic, kainate 1 / 0.694
4xg1 LLPDiaminopimelate decarboxylase / 0.693
4bdr KAIGlutamate receptor ionotropic, kainate 2 / 0.691
3c36 KAIGlutamate receptor ionotropic, kainate 1 / 0.688
3h03 UBPGlutamate receptor 2 / 0.685
2pbw DOQGlutamate receptor ionotropic, kainate 1 / 0.682
2xxv KAIGlutamate receptor ionotropic, kainate 2 / 0.676
3tza TZGGlutamate receptor 2 / 0.674
4f3g KAIGlutamate receptor 3 / 0.673
3t0i SAHPutative methyltransferase / 0.671
1u5a BIKL-lactate dehydrogenase 1.1.1.27 0.670
3t7t SAHUncharacterized protein / 0.667
1lbb KAIGlutamate receptor 2 / 0.666
1njs KEUTrifunctional purine biosynthetic protein adenosine-3 2.1.2.2 0.665
3sxj SAMPutative methyltransferase / 0.661
3kfm KAIGlutamate receptor 4 / 0.659
4f31 KAIGlutamate receptor 3 / 0.658
2eg8 FOTDihydroorotase 3.5.2.3 0.656
4i8x 6P3L-lactate dehydrogenase A chain 1.1.1.27 0.655
1u4s BIHL-lactate dehydrogenase 1.1.1.27 0.654