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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1veb I05 cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1veb I05cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 1.180
1sve I01cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.897
1svh I08cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.865
1svg I04cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.832
1xh8 R55cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.790
1xh4 R69cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.774
1xh7 R96cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.740
1xha R68cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.738
1xh6 R94cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.734
1xh9 R69cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.704
2vo0 M03cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.679
1xh5 R68cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.651