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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1vbi NAD Malate/L-lactate dehydrogenase family protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1vbi NADMalate/L-lactate dehydrogenase family protein / 1.114
1v9n NDPMalate dehydrogenase 1.1.1.37 0.853
2g8y NADHydroxycarboxylate dehydrogenase B / 0.823
1z2i NADPutative malate dehydrogenase / 0.817
2cwf NDPDelta(1)-pyrroline-2-carboxylate/Delta(1)-piperideine-2-carboxylate reductase / 0.813
3i0p NADMalate dehydrogenase, putative / 0.769
4h8a NAIUreidoglycolate dehydrogenase (NAD(+)) 1.1.1.350 0.745
2x06 NADL-sulfolactate dehydrogenase / 0.743
3b4w NADAldehyde dehydrogenase family protein / 0.652