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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1v93 FAD Methylenetetrahydrofolate reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1v93 FADMethylenetetrahydrofolate reductase / 1.514
3fsu FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.190
3apy FADMethylenetetrahydrofolate reductase / 1.181
1zp3 FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.130
1zpt FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.128
3fst FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.124
1b5t FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.069
2fmo FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.064
1zrq FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.998
1zp4 FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.995
3esz FMNFlavodoxin / 0.727
4dqw ATPInosine-5'-monophosphate dehydrogenase / 0.679
1aku FMNFlavodoxin / 0.670
2z6d FMNPhototropin-2 2.7.11.1 0.663
2fx2 FMNFlavodoxin / 0.662
1iqr FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.660
1n9n FMNPutative blue light receptor / 0.660
2hs6 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.659
3hgr FMN12-oxophytodienoate reductase 1 1.3.1.42 0.657
2isk FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.653
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.652