sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1v0c | ACO | AAC(6')-Ib |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1v0c | ACO | AAC(6')-Ib | / | 1.390 | |
| 2vqy | ACO | AAC(6')-Ib | / | 1.310 | |
| 2bue | COA | AAC(6')-Ib | / | 1.258 | |
| 2prb | COA | Aminoglycoside 6-N-acetyltransferase type Ib11 | / | 1.220 | |
| 2qir | COA | Aminoglycoside 6-N-acetyltransferase type Ib11 | / | 1.201 | |
| 2vzz | SCA | Putative succinyl-CoA transferase Rv0802c | 2.8.3 | 0.798 | |
| 2ge3 | ACO | Probable acetyltransferase | / | 0.775 | |
| 1yre | COA | Uncharacterized protein | / | 0.765 | |
| 1kuv | CA5 | Serotonin N-acetyltransferase | / | 0.735 | |
| 1kuy | COT | Serotonin N-acetyltransferase | / | 0.732 | |
| 4ava | ACO | Acetyltransferase Pat | 2.3.1 | 0.726 | |
| 1l0c | COT | Serotonin N-acetyltransferase | / | 0.724 | |
| 1pu9 | COA | HAT A1 | / | 0.713 | |
| 2q4v | ACO | Diamine acetyltransferase 2 | 2.3.1.57 | 0.707 | |
| 1ib1 | COT | Serotonin N-acetyltransferase | / | 0.705 | |
| 2bei | ACO | Diamine acetyltransferase 2 | 2.3.1.57 | 0.694 | |
| 2vez | ACO | Glucosamine 6-phosphate acetyltransferase, putative | / | 0.694 | |
| 3k9u | ACO | Spermidine N(1)-acetyltransferase | / | 0.692 | |
| 1b87 | ACO | Aac(6')-Ii protein | / | 0.691 | |
| 1cm0 | COA | Histone acetyltransferase KAT2B | 2.3.1.48 | 0.687 | |
| 1wwz | ACO | Uncharacterized protein | / | 0.685 | |
| 4jwp | ACO | GCN5-related N-acetyltransferase | / | 0.682 | |
| 3s6f | COA | Uncharacterized protein | / | 0.681 | |
| 1i12 | ACO | Glucosamine 6-phosphate N-acetyltransferase | / | 0.680 | |
| 1j4j | ACO | Acetyltransferase | 2.3.1 | 0.679 | |
| 2y0m | ACO | Histone acetyltransferase KAT8 | / | 0.677 | |
| 5h86 | BCO | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.675 | |
| 3exn | ACO | Probable acetyltransferase | / | 0.673 | |
| 4r87 | COA | Spermidine N(1)-acetyltransferase | / | 0.673 | |
| 4ag7 | COA | Glucosamine 6-phosphate N-acetyltransferase | / | 0.672 | |
| 1tiq | COA | Spermidine/spermine N(1)-acetyltransferase | / | 0.671 | |
| 2fxf | ACO | Diamine acetyltransferase 1 | / | 0.667 | |
| 4u9v | ACO | N-alpha-acetyltransferase 40 | 2.3.1 | 0.667 | |
| 3f8k | COA | Uncharacterized protein | / | 0.666 | |
| 3gya | COA | GCN5-related N-acetyltransferase | / | 0.666 | |
| 3gy9 | COA | GCN5-related N-acetyltransferase | / | 0.664 | |
| 2b3v | ACO | Diamine acetyltransferase 1 | / | 0.662 | |
| 1p0h | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.658 | |
| 2rc4 | ACO | Histone acetyltransferase KAT6A | / | 0.657 | |
| 3biy | 01K | Histone acetyltransferase p300 | / | 0.657 | |
| 4kvx | ACO | N-terminal acetyltransferase A complex catalytic subunit ard1 | 2.3.1.88 | 0.657 | |
| 1s3z | COA | Aminoglycoside N(6')-acetyltransferase type 1 | / | 0.656 | |
| 2bsw | CAO | Probable acetyltransferase | / | 0.653 | |
| 2jdc | CAO | Probable acetyltransferase | / | 0.653 | |
| 4zm6 | ACO | N-acetyl-beta-D glucosaminidase | / | 0.652 |