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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1up7 NAD 6-phospho-beta-glucosidase BglT 3.2.1.86

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1up7 NAD6-phospho-beta-glucosidase BglT 3.2.1.86 1.248
1up6 NAD6-phospho-beta-glucosidase BglT 3.2.1.86 0.815
1obb NADAlpha-glucosidase 3.2.1.20 0.798
4okn NAIL-lactate dehydrogenase A chain 1.1.1.27 0.741
4jnk NAIL-lactate dehydrogenase A chain 1.1.1.27 0.730
4wlu NADMalate dehydrogenase, mitochondrial 1.1.1.37 0.714
1hyh NADL-2-hydroxyisocaproate dehydrogenase / 0.705
4nfs NAJAlcohol dehydrogenase E chain 1.1.1.1 0.700
1axe NADAlcohol dehydrogenase E chain 1.1.1.1 0.698
1lde NADAlcohol dehydrogenase E chain 1.1.1.1 0.695
1u8x NADMaltose-6'-phosphate glucosidase 3.2.1.122 0.695
2vhv NAIAlanine dehydrogenase 1.4.1.1 0.695
1heu NADAlcohol dehydrogenase E chain 1.1.1.1 0.694
2jhf NADAlcohol dehydrogenase E chain 1.1.1.1 0.694
4wlv NADMalate dehydrogenase, mitochondrial 1.1.1.37 0.694
2a94 AP0L-lactate dehydrogenase 1.1.1.27 0.689
1ht0 NADAlcohol dehydrogenase 1C 1.1.1.1 0.687
4xd2 NAIAlcohol dehydrogenase E chain 1.1.1.1 0.686
1vjt NADAlpha-glucosidase, putative / 0.685
1pzg A3DLactate dehydrogenase / 0.677
4oaq NDPR-specific carbonyl reductase / 0.676
1x7d NADPutative ornithine cyclodeaminase / 0.673
1mp0 NADAlcohol dehydrogenase class-3 1.1.1.1 0.670
1adc PADAlcohol dehydrogenase E chain 1.1.1.1 0.668
2x0i NAIMalate dehydrogenase / 0.668
1a71 NADAlcohol dehydrogenase E chain 1.1.1.1 0.664
1e3l NADAlcohol dehydrogenase 4 1.1.1.1 0.663
1hf3 NADAlcohol dehydrogenase E chain 1.1.1.1 0.662
1adb CNDAlcohol dehydrogenase E chain 1.1.1.1 0.660
1o6z NADMalate dehydrogenase / 0.660
2voj NADAlanine dehydrogenase 1.4.1.1 0.660
4l4s NAIL-lactate dehydrogenase A chain 1.1.1.27 0.659
1ib6 NADMalate dehydrogenase / 0.658
2eer NADNAD-dependent alcohol dehydrogenase 1.1.1.1 0.656
1sow NADL-lactate dehydrogenase 1.1.1.27 0.655
2aa3 AP0L-lactate dehydrogenase / 0.655
2fze APRAlcohol dehydrogenase class-3 1.1.1.1 0.653