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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1uoq GLU_PHE_SER_PRO Prolyl endopeptidase 3.4.21.26

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1uoq GLU_PHE_SER_PROProlyl endopeptidase 3.4.21.26 1.072
1uop GLY_PHE_GLU_PROProlyl endopeptidase 3.4.21.26 1.047
1uoo GLY_PHE_ARG_PROProlyl endopeptidase 3.4.21.26 0.960
1e8m P0HProlyl endopeptidase 3.4.21.26 0.946
4bcd TDVProlyl endopeptidase 3.4.21.26 0.745
3eq9 X97Prolyl endopeptidase 3.4.21.26 0.713